Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCCGGCAAGCACGTGCCCCGCTGCATCTTCCTGGACCTGGAGCCCACCGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacgccaattccacatgtcacgcgacgtcgagcttctgttgagcagctggcccattgttaaatgtgcatgcttaggcgctcgacagccaaatgcccatgggcgtgcatatcttacagcccagttttcgtacccttgactgcgtttcctcgtctcgctcttaacattgcctttacccccttcccgcccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04366
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161807624|gb|FC095448.1|FC095448
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|6547489|gb|AV393273.1|AV393273
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|49464433|gb|BP092346.1|BP092346
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTAGCGGCAGCGGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGGCGGCAACAACTTCGCCCGCGGGC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|10769441|gb|AV620266.1|AV620266
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|49459472|gb|BP087385.1|BP087385
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAG
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAG
EST: gi|161811212|gb|FC095337.1|FC095337
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|8933142|gb|BE227903.1|BE227903
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|49467151|gb|BP095064.1|BP095064
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCG
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCG
EST: gi|161799093|gb|FC082430.1|FC082430
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|22069361|gb|BQ818972.1|BQ818972
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|7616100|gb|AW721540.1|AW721540
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161816082|gb|FC103790.1|FC103790
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161816130|gb|FC103812.1|FC103812
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|22075107|gb|BQ823883.1|BQ823883
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161809602|gb|FC097400.1|FC097400
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161806521|gb|FC089029.1|FC089029
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|49470716|gb|BP098577.1|BP098577
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGNC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|6546814|gb|AV392598.1|AV392598
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCC-GCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|10794312|gb|AV631678.1|AV631678
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATC
EST: gi|161816047|gb|FC103768.1|FC103768
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|10780029|gb|AV636709.1|AV636709
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|7686884|gb|AW757532.1|AW757532
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|8828326|gb|BE212056.1|BE212056
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161805348|gb|FC088649.1|FC088649
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|10786614|gb|AV643286.1|AV643286
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGAC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161810416|gb|FC098246.1|FC098246
EST:     GCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: GCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161791641|gb|FC078588.1|FC078588
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161820646|gb|FC106146.1|FC106146
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161802180|gb|FC092056.1|FC092056
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161816436|gb|FC100530.1|FC100530
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161799770|gb|FC085304.1|FC085304
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|7687142|gb|AW757790.1|AW757790
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161806546|gb|FC090991.1|FC090991
EST:     CCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|22070840|gb|BQ820178.1|BQ820178
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161793740|gb|FC080199.1|FC080199
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|6544835|gb|AV390619.1|AV390619
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161824016|gb|FC110901.1|FC110901
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|22061693|gb|BQ814404.1|BQ814404
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161795853|gb|FC087343.1|FC087343
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161796704|gb|FC083164.1|FC083164
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|10191440|gb|BE761516.1|BE761516
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161814717|gb|FC102834.1|FC102834
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|49465018|gb|BP092931.1|BP092931
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCC
EST: gi|22063525|gb|BQ815258.1|BQ815258
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161794327|gb|FC081657.1|FC081657
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161792096|gb|FC079777.1|FC079777
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161806523|gb|FC089031.1|FC089031
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|22074939|gb|BQ823715.1|BQ823715
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161794737|gb|FC081066.1|FC081066
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161818671|gb|FC104158.1|FC104158
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161801192|gb|FC084789.1|FC084789
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161815396|gb|FC104800.1|FC104800
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|10777845|gb|AV634525.1|AV634525
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161814235|gb|FC100090.1|FC100090
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|7593302|gb|AW707441.1|AW707441
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|10794252|gb|AV631618.1|AV631618
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATC
EST: gi|49468679|gb|BP096540.1|BP096540
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|6544629|gb|AV390413.1|AV390413
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161802313|gb|FC092930.1|FC092930
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|22061685|gb|BQ814396.1|BQ814396
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|6546539|gb|AV392323.1|AV392323
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|6547047|gb|AV392831.1|AV392831
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGAC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161803378|gb|FC088574.1|FC088574
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|49470002|gb|BP097863.1|BP097863
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGNCAACAACTTCGCCCGCGGNC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|16072933|gb|BI874929.1|BI874929
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|161802935|gb|FC090237.1|FC090237
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCTG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTCGCCCGCGGCC
EST: gi|10773385|gb|AV624208.1|AV624208
EST:     CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCG                         AGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTC
genomic: CGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacg ... ccgcccacagAGCAGCTGATCTCCGGCAAGGAGGATGCCGCCAACAACTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGCCGGCAAGCACGTGCCCCGCTGCATCTTCCTGGACCTGGAGCCCACCGTGGTGGATGAGGTCCGCACCGGCACCTACCGCCAGCTGTTCCACCCCGgtgagtgacgccaattccacatgtcacgcgacgtcgagcttctgttgagcagctggcccattgttaaatgtgcatgcttaggcgctcgacagccaaatgcccatgggcgtgcatatcttacagcccagttttcgtacccttgactgcgtttcctcgtctcgctcttaacattgcctttacccccttcccgcccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT