Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAAAGCTCCCTTCTCCTTCCCCTGATTTTCTCCGTCTCCTCCCTTCGCAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgacagagcgagagcgcgctgggacgtcgttgccgagtttgaatcgccttgcctcccccccgcggcctccagctgtgtccgattagccttgcta...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04366
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161807624|gb|FC095448.1|FC095448
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|6547489|gb|AV393273.1|AV393273
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49464433|gb|BP092346.1|BP092346
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|10769441|gb|AV620266.1|AV620266
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49459472|gb|BP087385.1|BP087385
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|8933142|gb|BE227903.1|BE227903
EST:     GTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: GTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49467151|gb|BP095064.1|BP095064
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161799093|gb|FC082430.1|FC082430
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|22069361|gb|BQ818972.1|BQ818972
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|7616100|gb|AW721540.1|AW721540
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161816082|gb|FC103790.1|FC103790
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49460021|gb|BP087934.1|BP087934
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|10783747|gb|AV640419.1|AV640419
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGG
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGG
EST: gi|49461251|gb|BP089164.1|BP089164
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|22075107|gb|BQ823883.1|BQ823883
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49460159|gb|BP088072.1|BP088072
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161809602|gb|FC097400.1|FC097400
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161806521|gb|FC089029.1|FC089029
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49470716|gb|BP098577.1|BP098577
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|10794312|gb|AV631678.1|AV631678
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161816047|gb|FC103768.1|FC103768
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|10780029|gb|AV636709.1|AV636709
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGAATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|7686884|gb|AW757532.1|AW757532
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTTTACTGCCTGGAGCACGGCATCCAGCCT
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49461221|gb|BP089134.1|BP089134
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|8828326|gb|BE212056.1|BE212056
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161805348|gb|FC088649.1|FC088649
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|10786614|gb|AV643286.1|AV643286
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161791641|gb|FC078588.1|FC078588
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161820646|gb|FC106146.1|FC106146
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161802180|gb|FC092056.1|FC092056
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161816436|gb|FC100530.1|FC100530
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49468307|gb|BP096168.1|BP096168
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49468013|gb|BP095874.1|BP095874
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|22070840|gb|BQ820178.1|BQ820178
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCCTCTACTGCCTGGAGCACGGCATCCAGCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAG-CTCTACTGCCTGGAGCACGGCATCCAGCC
EST: gi|161793740|gb|FC080199.1|FC080199
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|6544835|gb|AV390619.1|AV390619
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161824016|gb|FC110901.1|FC110901
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|22061693|gb|BQ814404.1|BQ814404
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161795853|gb|FC087343.1|FC087343
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161796704|gb|FC083164.1|FC083164
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|10191440|gb|BE761516.1|BE761516
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49465018|gb|BP092931.1|BP092931
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|22063525|gb|BQ815258.1|BQ815258
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161794327|gb|FC081657.1|FC081657
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161792096|gb|FC079777.1|FC079777
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161806523|gb|FC089031.1|FC089031
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|22074939|gb|BQ823715.1|BQ823715
EST:     CAACCATGCGTGAGGGCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49460777|gb|BP088690.1|BP088690
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49466755|gb|BP094668.1|BP094668
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161801192|gb|FC084789.1|FC084789
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49458708|gb|BP086621.1|BP086621
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|10775250|gb|AV631930.1|AV631930
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161815396|gb|FC104800.1|FC104800
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|10777845|gb|AV634525.1|AV634525
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161814235|gb|FC100090.1|FC100090
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|7593302|gb|AW707441.1|AW707441
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|10794252|gb|AV631618.1|AV631618
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|6544629|gb|AV390413.1|AV390413
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161802313|gb|FC092930.1|FC092930
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|6546171|gb|AV391955.1|AV391955
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|22061685|gb|BQ814396.1|BQ814396
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|6546539|gb|AV392323.1|AV392323
EST:     CACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|6547047|gb|AV392831.1|AV392831
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCAGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|49470002|gb|BP097863.1|BP097863
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|16072933|gb|BI874929.1|BI874929
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|161802935|gb|FC090237.1|FC090237
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCATGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
EST: gi|10773385|gb|AV624208.1|AV624208
EST:     CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAG                         GTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC
genomic: CAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgac ... gcccggacagGTGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGAAAAGCTCCCTTCTCCTTCCCCTGATTTTCTCCGTCTCCTCCCTTCGCAACCATGCGTGAGGTCATCTCCATCCACATCGGCCAGGCCGGTATCCAGgtcagttgacagagcgagagcgcgctgggacgtcgttgccgagtttgaatcgccttgcctcccccccgcggcctccagctgtgtccgattagccttgcta

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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtgt