1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTGgtgagttggttgtgctagcccagacttgacctgagctaagactccggccctagcgcaactgcggcggtgtagtacggaagtgtttgagctgtcgtgaaca...
species | Chlamydomonas reinhardtii |
transcript | EDP04364 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTG ATGGGCGACACCTGGCCTGGGTTGCCGTTCCGCTCATGGTACTGGCGCTGGEST: gi|6541030|gb|AV386814.1|AV386814
genomic: CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTGgtgagttggt ... cactgaacagATGGGCGACACCTGGCCTGGGTTGCCGTTCCGCTCATGGTACTGGCGCTGG
EST: GCCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTG ATGGGCGACACCTGGCCTGGGTTGCCGTTCCGCTCATGGTACTGGCGCTGGEST: gi|10777251|gb|AV633931.1|AV633931
genomic: GCCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTGgtgagttggt ... cactgaacagATGGGCGACACCTGGCCTGGGTTGCCGTTCCGCTCATGGTACTGGCGCTGG
EST: CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTG ATGGGCGACACCT
genomic: CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTGgtgagttggt ... cactgaacagATGGGCGACACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTGgtgagttggttgtgctagcccagacttgacctgagctaagactccggccctagcgcaactgcggcggtgtagtacggaagtgtttgagctgtcgtgaaca
- - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgttt