1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggaggctcgtgtcgctggctgagtgggagggttctcgtgcctgaaacttgaaacaactcgtaatctccacgggtcccctgaccgctcccttgtcttgcagCCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTG
species | Chlamydomonas reinhardtii |
transcript | EDP04364 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCGGCAGCAGGAGCGCGCCAGATGCGGGGCAACCGCGTGACCAGCAGG CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTGEST: gi|10777251|gb|AV633931.1|AV633931
genomic: AGGCGGCAGCAGGAGCGCGCCAGATGCGGGGCAACCGCGTGACCAGCAGGgtaagcagca ... tgtcttgcagCCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTG
EST: AGGCGGCAGCAGGAGCGCGCCAGATGCGGGGCAACCGCGTGACCAGCAGG CCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTG
genomic: AGGCGGCAGCAGGAGCGCGCCAGATGCGGGGCAACCGCGTGACCAGCAGGgtaagcagca ... tgtcttgcagCCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTG
acttgaaacaactcgtaatctccacgggtcccctgaccgctcccttgtcttgcagCCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTG
ccctgac putative branch site (score: 3)
ccgctcccttgtctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaggctcgtgtcgctggctgagtgggagggttctcgtgcctgaaacttgaaacaactcgtaatctccacgggtcccctgaccgctcccttgtcttgcagCCTCGGCGGCTGGGCTCGGCGTGGGGAGCGCGCCTGGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - ctgaaac
- - - - - - - - - - - - - - - - - - - - - - - - - aaacaac