1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagggccgcattttcgcgggcgaacgcagccgaggcttggaaagcctcgccggggacctcaactaaagaggctaaggcgtgaactacgctgctcatgctaatgacagGACGCGGACGCGGCTCTGTCGGACGAGCGCTTTATTAACGGGTACCAGCTGGACAAGAACCACAAGCTGACGCTGAGCCGCTTCGACGACTTTGATAAGT
species | Chlamydomonas reinhardtii |
transcript | EDP04360 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAACTAAGACCACGAAGGGTTTTGCGTTTGTGGAGATGGCACGCAAGGAG GACGCGGACGCGGCTCTGTCGGACGAGCGCTTTATTAACGGGTACCAGCTGEST: gi|14239849|gb|BG858665.1|BG858665
genomic: CAACTAAGACCACGAAGGGTTTTGCGTTTGTGGAGATGGCACGCAAGGAGgtaagggccg ... ctaatgacagGACGCGGACGCGGCTCTGTCGGACGAGCGCTTTATTAACGGGTACCAGCTG
EST: CAACTAAGACCACGAAGGGTTTTGCGTTTGTGGAGATGGCACGCAAGGAG GACGCGGACGCGGCTCTGTCGGACGAGCGCTTTATTAACGGGTACCAGCTGEST: gi|49466537|gb|BP094450.1|BP094450
genomic: CAACTAAGACCACGAAGGGTTTTGCGTTTGTGGAGATGGCACGCAAGGAGgtaagggccg ... ctaatgacagGACGCGGACGCGGCTCTGTCGGACGAGCGCTTTATTAACGGGTACCAGCTG
EST: CAACTAAGACCACGAAGGGTTTTGCGTTTGTGGAGATGGCACGCAAGGAG GACGCGGACGCGGCTCTGTCGGACGAGCGCTTTATTAACGGGTACCAGCTG
genomic: CAACTAAGACCACGAAGGGTTTTGCGTTTGTGGAGATGGCACGCAAGGAGgtaagggccg ... ctaatgacagGACGCGGACGCGGCTCTGTCGGACGAGCGCTTTATTAACGGGTACCAGCTG
gggacctcaactaaagaggctaaggcgtgaactacgctgctcatgctaatgacagGACGCGGACGCGGCTCTGTCGGACGAGCGCTTTATTAACGGGTACCAGCTGGACAAGAACCACAAGCTGACGCTGAGCCGCTTCGACGACTTTGATAAGT
tgctaat putative branch site (score: 2)
aactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggccgcattttcgcgggcgaacgcagccgaggcttggaaagcctcgccggggacctcaactaaagaggctaaggcgtgaactacgctgctcatgctaatgacagGACGCGGACGCGGCTCTGTCGGACGAGCGCTTTATTAACGGGTACCAGCTGGACAAGAACCACAAGCTGACGCTGAGCCGCTTCGACGACTTTGATAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA