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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATTCTGCCTCCGGGCGATGATATGGGAATCAAGAGCGACGATGATGACGTTCGTGACGAGGACGTGCAGACGCAGTCGGGCTTCGGATCGTGCATCGgtgagggcggcggcgactctggggccacgcagctgagctatttgtcagggcgactgctgacgatgtgaaacgtgcggatcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04360
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14240953|gb|BG859769.1|BG859769
EST:     CGTTCGTGACGAGGACGTGCAGACGCAGTCGGGCTTCGGATCGTGCATCG                         TCATTCAGAACCTGCCCAAGGCGCCGGAGGAGAAGTATGAGAAGCTCATGG
genomic: CGTTCGTGACGAGGACGTGCAGACGCAGTCGGGCTTCGGATCGTGCATCGgtgagggcgg ... cggatcgcagTCATTCAGAACCTGCCCAAGGCGCCGGAGGAGAAGTATGAGAAGCTCATGG
EST: gi|14239849|gb|BG858665.1|BG858665
EST:     CGTTCGTGACGAGGACGTGCAGAC-CAGTCGGGCTTCGGATCGTGCATCG                         TCATTCAGAACCTGCCCAAGGCGCCGGAGGAGAAGTATGAGAAGCTCATGG
genomic: CGTTCGTGACGAGGACGTGCAGACGCAGTCGGGCTTCGGATCGTGCATCGgtgagggcgg ... cggatcgcagTCATTCAGAACCTGCCCAAGGCGCCGGAGGAGAAGTATGAGAAGCTCATGG
EST: gi|49466537|gb|BP094450.1|BP094450
EST:     CGAGGACGTGCAGACGCAGTCGGGCTTCGGATCGTGCATCG                         TCATTCAGAACCTGCCCAAGGCGCCGGAGGAGAAGTATGAGAAGCTCATGG
genomic: CGAGGACGTGCAGACGCAGTCGGGCTTCGGATCGTGCATCGgtgagggcgg ... cggatcgcagTCATTCAGAACCTGCCCAAGGCGCCGGAGGAGAAGTATGAGAAGCTCATGG