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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCGCGGGCAACTTCGAGGAGGCTGCTAAGTTCTTCACGGAGGCAATTGGCGTGGACCCAGGCAACCACGTCCTCTACAGCAACCGCAGCGCGTCGTATgtgagcaaaggatgggccgtggcggcggcggggcagtatcagggtgtaagcggccgtcgtgaaagactgtgtagtcacggtgaaatatgatgctgcatgtgtgtttcgggcgctcccggggcagcccaggaaggtgtccggcctttgggagacgtatcgtgcgcgactgaccggcccctccgcaacacgcgctgtag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04359
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49467723|gb|BP095584.1|BP095584
EST:     GCGTGGACCCAGGCAACCACGTCCTCTACAGCAACCGCAGCGCGTCGTAT                         GCGAGCCTCAAGCGGTATACCGATGCGCTGGATGACGCAAAGAAG
genomic: GCGTGGACCCAGGCAACCACGTCCTCTACAGCAACCGCAGCGCGTCGTATgtgagcaaag ... cgcgctgtagGCGAGCCTCAAGCGGTATACCGATGCGCTGGATGACGCAAAGAAG
EST: gi|15910539|gb|BI816396.1|BI816396
EST:     GCGTGGACCCAGGCAACCACGTCCTCTACAGCAACCGCAGCGCGTCGTAT                         GCGAGCCTCAAGCGGTATACCGATGCGCTGGATGACGCAAAGAAG
genomic: GCGTGGACCCAGGCAACCACGTCCTCTACAGCAACCGCAGCGCGTCGTATgtgagcaaag ... cgcgctgtagGCGAGCCTCAAGCGGTATACCGATGCGCTGGATGACGCAAAGAAG