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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagcattcacgatgtcgtagcgactggcagggcagcgtgccggtatcgagcagcacggagggggcgccgtcgacggtgctggaaggcccgcgcttactcctcgtcacgcacacccggtcgcagGCCAAGGGAAATGCCGCGTTCAGCGCGGGCAACTTCGAGGAGGCTGCTAAGTTCTTCACGGAGGCAATTGGCGTGGACCCAGGCAACCACGTCCTCTACA

Basic information

species Chlamydomonas reinhardtii
transcript EDP04359
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49467723|gb|BP095584.1|BP095584
EST:     GAGGACTGAGCCACGAAGAGCACGTAACCATGTCTTCGGACGAGCTTAAG                         GCCAAGGGAAATGCCGCGTTCAGCGCGGGCAACTTCGAGGAGGCTGCTAAG
genomic: GAGGACTGAGCCACGAAGAGCACGTAACCATGTCTTCGGACGAGCTTAAGgtatgtagca ... ccggtcgcagGCCAAGGGAAATGCCGCGTTCAGCGCGGGCAACTTCGAGGAGGCTGCTAAG
EST: gi|15910539|gb|BI816396.1|BI816396
EST:     GAGGACTGAGCCACGAAGAGCACGTAACCATGTCTTCGGACGAGCTTAAG                         GCCAAGGGAAATGCCGCGTTCAGCGCGGGCAACTTCGAGGAGGCTGCTAAG
genomic: GAGGACTGAGCCACGAAGAGCACGTAACCATGTCTTCGGACGAGCTTAAGgtatgtagca ... ccggtcgcagGCCAAGGGAAATGCCGCGTTCAGCGCGGGCAACTTCGAGGAGGCTGCTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcgacggtgctggaaggcccgcgcttactcctcgtcacgcacacccggtcgcagGCCAAGGGAAATGCCGCGTTCAGCGCGGGCAACTTCGAGGAGGCTGCTAAGTTCTTCACGGAGGCAATTGGCGTGGACCCAGGCAACCACGTCCTCTACA
                      cgcttac  putative branch site (score: 3)