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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGCTCGCCTGTTTGTGTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGGgtgcgtgcgcggggctgttgtgggcgtgggggcgcggagctggggggcagccaggcttgcgtggggtgccgtgtgggagtagggtggggtctgggtggtg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04329
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16430847|gb|BI996073.1|BI996073
EST:     GTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGG                         GCTTTGTGGGCTTTGTGCTGAGCCTGAAGAA-GGTCTGTACCTGCACCAGT
genomic: GTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGGgtgcgtgcgc ... ctgcacgcagGCTTTGTGGGCTTTGTGCTGAGCCTGAAGAAAGGTCTGTACCTGCACCAGT
EST: gi|22075350|gb|BQ824126.1|BQ824126
EST:     GTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGAGG                         GCTTTGTGGGC
genomic: GTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGGgtgcgtgcgc ... ctgcacgcagGCTTTGTGGGC
EST: gi|22067933|gb|BQ817932.1|BQ817932
EST:     GTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGG                         GCTTTGTGGGCTTTGTGCTGAGCCTGAAGAAAGGTCTGTACCTGCACCAGT
genomic: GTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGGgtgcgtgcgc ... ctgcacgcagGCTTTGTGGGCTTTGTGCTGAGCCTGAAGAAAGGTCTGTACCTGCACCAGT
EST: gi|15698006|gb|BI722311.1|BI722311
EST:     GTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGG                         GCTNTGTGGGCTTTGTGCTGAGCCTGAAGAA-GGTCTGTACCTGCACCAGT
genomic: GTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGGgtgcgtgcgc ... ctgcacgcagGCTTTGTGGGCTTTGTGCTGAGCCTGAAGAAAGGTCTGTACCTGCACCAGT
EST: gi|8400889|gb|BE056523.1|BE056523
EST:     GTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGG                         GCTTTGTGGGCTTTGTGCTGAGCCTG
genomic: GTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGGgtgcgtgcgc ... ctgcacgcagGCTTTGTGGGCTTTGTGCTGAGCCTG
EST: gi|15693436|gb|BI717741.1|BI717741
EST:     GTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGG                         GCTNTGTGGGCTTTGTGCTGAGCCTGAAGAAAGGTCTGTACCTGCACCAGT
genomic: GTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGGgtgcgtgcgc ... ctgcacgcagGCTTTGTGGGCTTTGTGCTGAGCCTGAAGAAAGGTCTGTACCTGCACCAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGCTCGCCTGTTTGTGTGGGCGGTGAAGCACCACAGCCTCATCAGCTACTCGCTCTACATGGCGGgtgcgtgcgcggggctgttgtgggcgtgggggcgcggagctggggggcagccaggcttgcgtggggtgccgtgtgggagtagggtggggtctgggtggtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgggt