1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgttattgtgcagcagcttcccaggccgaggccctaaaaccgaccgtggttctgccgctgcacagGCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCCAAGCCCGTGGATCGA
species | Chlamydomonas reinhardtii |
transcript | EDP04329 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTTGACGGAAGAACCTAGTTCGCAATCAAAATGCGACCAAAACAACAA GCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCCEST: gi|22075350|gb|BQ824126.1|BQ824126
genomic: TCGTTGACGGAAGAACCTAGTTCGCAATCAAAATGCGACCAAAACAACAAgtatgttatt ... cgctgcacagGCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCC
EST: TCGTTGACGGAAGAACCTAGTTCGCAATCAAAATGCGACCAAAACAACAA GCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCCEST: gi|15698006|gb|BI722311.1|BI722311
genomic: TCGTTGACGGAAGAACCTAGTTCGCAATCAAAATGCGACCAAAACAACAAgtatgttatt ... cgctgcacagGCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCC
EST: TCGTTGACGGAAGAACCTAGTTCGCAATCAAAATGCGACCAAAACAACAA GCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCCEST: gi|8400889|gb|BE056523.1|BE056523
genomic: TCGTTGACGGAAGAACCTAGTTCGCAATCAAAATGCGACCAAAACAACAAgtatgttatt ... cgctgcacagGCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCC
EST: TCGTTGACGGAAGAACCTAGTTCGCAATCAAAATGCGACCAAAACAACAA GCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCCEST: gi|15693436|gb|BI717741.1|BI717741
genomic: TCGTTGACGGAAGAACCTAGTTCGCAATCAAAATGCGACCAAAACAACAAgtatgttatt ... cgctgcacagGCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCC
EST: TCGTTGACGGAAGAACCTAGTTCGCAATCAAAATGCGACCAAAACAACAA GCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCCEST: gi|10790160|gb|AV627526.1|AV627526
genomic: TCGTTGACGGAAGAACCTAGTTCGCAATCAAAATGCGACCAAAACAACAAgtatgttatt ... cgctgcacagGCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCC
EST: TCGTTGACGGAAGAACCTAGTTCGCAATCAAAATGCGACCAAAACAACAA GCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCC
genomic: TCGTTGACGGAAGAACCTAGTTCGCAATCAAAATGCGACCAAAACAACAAgtatgttatt ... cgctgcacagGCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCC
cagcagcttcccaggccgaggccctaaaaccgaccgtggttctgccgctgcacagGCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCCAAGCCCGTGGATCGA
ccctaaa putative branch site (score: 3)
ttctgcc putative PPT
taaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttattgtgcagcagcttcccaggccgaggccctaaaaccgaccgtggttctgccgctgcacagGCTCAGGTCACCGCCGCGGAGGACACCGCGTCGGAGCCGGAGCCGGAGCCCAAGCCCGTGGATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA