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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCGCCTACATAGCGGAGAAGTCCAAACGCAGCCTGCCGCTGCTGCGCACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCGgtgcgtgtgcgctgggcaggaggaggagcgggaggggaggaggaggaggaaggggaggaggaggagcgaaaggcgccgggaatggcgagggccggaggtc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04328
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16430847|gb|BI996073.1|BI996073
EST:     ACACAGCAGTGGTACTTCTTCTT-ACGGCAGTGTTCTGGCTCTACCTCCG                         GTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
genomic: ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCGgtgcgtgtgc ... accctcccagGTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
EST: gi|22075350|gb|BQ824126.1|BQ824126
EST:     ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCG                         GTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
genomic: ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCGgtgcgtgtgc ... accctcccagGTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
EST: gi|22067933|gb|BQ817932.1|BQ817932
EST:     ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCG                         GTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
genomic: ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCGgtgcgtgtgc ... accctcccagGTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
EST: gi|15698006|gb|BI722311.1|BI722311
EST:     ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCG                         GTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
genomic: ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCGgtgcgtgtgc ... accctcccagGTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
EST: gi|8400889|gb|BE056523.1|BE056523
EST:     ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCG                         GTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
genomic: ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCGgtgcgtgtgc ... accctcccagGTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
EST: gi|15693436|gb|BI717741.1|BI717741
EST:     ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCG                         GTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
genomic: ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCGgtgcgtgtgc ... accctcccagGTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
EST: gi|10790160|gb|AV627526.1|AV627526
EST:     ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCG                         GTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC
genomic: ACACAGCAGTGGTACTTCTTCTTCACGGCAGTGTTCTGGCTCTACCTCCGgtgcgtgtgc ... accctcccagGTTCATCAAGAACAACTTGCTAGTGGAAGTGACCAGCGACATGACCCTGGC