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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCGTACGCACCATCTCCTCGGTCTTGCTCATCGGCGGGTTCATCGGCATCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAGgcatgtcacgcacccgggcgtgtgtctgtgcgtgcgttgggatttgaccgccaggacggcaggccagcgaagcgtttgtctgtcggcagggccccccttg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04328
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16430847|gb|BI996073.1|BI996073
EST:     TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAG                         TTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
genomic: TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAGgcatgtcacg ... cctcccgcagTTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
EST: gi|22075350|gb|BQ824126.1|BQ824126
EST:     TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAG                         TTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
genomic: TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAGgcatgtcacg ... cctcccgcagTTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
EST: gi|22067933|gb|BQ817932.1|BQ817932
EST:     TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAG                         TTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
genomic: TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAGgcatgtcacg ... cctcccgcagTTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
EST: gi|15698006|gb|BI722311.1|BI722311
EST:     TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAG                         TTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
genomic: TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAGgcatgtcacg ... cctcccgcagTTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
EST: gi|8400889|gb|BE056523.1|BE056523
EST:     TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAG                         TTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
genomic: TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAGgcatgtcacg ... cctcccgcagTTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
EST: gi|15693436|gb|BI717741.1|BI717741
EST:     TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAG                         TTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
genomic: TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAGgcatgtcacg ... cctcccgcagTTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
EST: gi|10790160|gb|AV627526.1|AV627526
EST:     TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAG                         TTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC
genomic: TCATTTGGGCGGGTCATGTGCCGCTTATGTTCTTCATCCTGCTACTCCAGgcatgtcacg ... cctcccgcagTTCCTGGTGGCCCGGGAGCTCTTCCGCATCGCCTACATAGCGGAGAAGTCC