1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgcgcagtgatgggagcgggaccttctatcggatgctgcctgtgcttcaccgctgacatgaactttgtttttacctgcagCCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCGGTGCCGAACTTCCGGGCTCAGAACCTGAAGCCCGGCGAGGTCGGCAAGT
species | Chlamydomonas reinhardtii |
transcript | EDP03873 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAG CCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCGEST: gi|7687822|gb|AW758468.1|AW758468
genomic: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAGgtgcgcagtg ... ttacctgcagCCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCG
EST: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAG CCTCTGCTGAAGTTC-ACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCGEST: gi|10787364|gb|AV644036.1|AV644036
genomic: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAGgtgcgcagtg ... ttacctgcagCCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCG
EST: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAG CCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCGEST: gi|6547789|gb|AV393573.1|AV393573
genomic: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAGgtgcgcagtg ... ttacctgcagCCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCG
EST: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAG CCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCGEST: gi|6544601|gb|AV390385.1|AV390385
genomic: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAGgtgcgcagtg ... ttacctgcagCCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCG
EST: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAG CCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCGEST: gi|49470461|gb|BP098322.1|BP098322
genomic: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAGgtgcgcagtg ... ttacctgcagCCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCG
EST: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAG CCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCGEST: gi|15368070|gb|BI527496.1|BI527496
genomic: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAGgtgcgcagtg ... ttacctgcagCCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCG
EST: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAG CCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCG
genomic: TGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACAGCAAGGGCGAGgtgcgcagtg ... ttacctgcagCCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCG
ctatcggatgctgcctgtgcttcaccgctgacatgaactttgtttttacctgcagCCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCGGTGCCGAACTTCCGGGCTCAGAACCTGAAGCCCGGCGAGGTCGGCAAGT
cgctgac putative branch site (score: 3)
ctttgtttttacct putative PPT
tttgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcagtgatgggagcgggaccttctatcggatgctgcctgtgcttcaccgctgacatgaactttgtttttacctgcagCCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCGAGGACCTGACCGCGCCGGTGCCGAACTTCCGGGCTCAGAACCTGAAGCCCGGCGAGGTCGGCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC