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gtgaggttggacgggtccccatgccgcaagagatgctctcggaacacgtgcggtttgcgctctattgcttgcagAACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCCACGGAGGGCCTGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACA
species | Chlamydomonas reinhardtii |
transcript | EDP03873 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAG AACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCCEST: gi|7687822|gb|AW758468.1|AW758468
genomic: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAGgtgaggttgg ... ttgcttgcagAACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCC
EST: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAG AACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCCEST: gi|10787364|gb|AV644036.1|AV644036
genomic: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAGgtgaggttgg ... ttgcttgcagAACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCC
EST: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAG AACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCCEST: gi|6547789|gb|AV393573.1|AV393573
genomic: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAGgtgaggttgg ... ttgcttgcagAACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCC
EST: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAG AACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCCEST: gi|6544601|gb|AV390385.1|AV390385
genomic: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAGgtgaggttgg ... ttgcttgcagAACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCC
EST: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAG AACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCCEST: gi|49470461|gb|BP098322.1|BP098322
genomic: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAGgtgaggttgg ... ttgcttgcagAACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCC
EST: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAG AACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCCEST: gi|15368070|gb|BI527496.1|BI527496
genomic: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAGgtgaggttgg ... ttgcttgcagAACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCC
EST: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAG AACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCC
genomic: ATGTGACCGCCCTGAAGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAGgtgaggttgg ... ttgcttgcagAACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCC
catgccgcaagagatgctctcggaacacgtgcggtttgcgctctattgcttgcagAACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCCACGGAGGGCCTGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACA
ctctatt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggttggacgggtccccatgccgcaagagatgctctcggaacacgtgcggtttgcgctctattgcttgcagAACAAGGAGAGTACTGCCCTCCTGGACGAGTGGAAGTCAAAGAAGGAGGCCACGGAGGGCCTGCTGAAGCTGCTGCAGTCCTACAAGGACCTGGGCGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG