Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgggatcacgccgccgggctcttgaccagtcatcctagctatatatggggcatacgatgatggcaaccaagccatatgcgctacagagtacacaagccgtgtgcgctgttctgtcacatcgcagGGGCCCCGGTACTGTAGCAACTTCCCCGCCTTCCCGCCCACCTGCCCCGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP03870
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22058746|gb|BQ813092.1|BQ813092
EST:     TCTTGTGGGAGCTGTACCACGGNCGGCGTGCGGGAGTCCGAACCCAGGAG                         GGGCCCCGGTACTGTAGCAACTTCCCCGCCT
genomic: TCTTGTGGGAGCTGTACCACGGCCGGCGTGCGGGAGTCCGAACCCAGGAGgtgcgggatc ... cacatcgcagGGGCCCCGGTACTGTAGCAACTTCCCCGCCT
EST: gi|15693822|gb|BI718127.1|BI718127
EST:     TCTTGTGGGAGCTGTACCACGGCCGGCGTGCGGGAGTCCGAACCCAGGAG                         GGGCCCCGGTACTGTAGCAACTTCCCCGCCTTCCCGCCCACCTGCCCCGAG
genomic: TCTTGTGGGAGCTGTACCACGGCCGGCGTGCGGGAGTCCGAACCCAGGAGgtgcgggatc ... cacatcgcagGGGCCCCGGTACTGTAGCAACTTCCCCGCCTTCCCGCCCACCTGCCCCGAG
EST: gi|22058750|gb|BQ813093.1|BQ813093
EST:     TCTTGTGGGAGCTGTACCACGGCCGGCGTGCGGGAGTCCGAACCCAGGAG                         GGGCCCCGGTACTGTAGCAACTTCCCCGCCTTCCCGCCCACCTGCCCCGAG
genomic: TCTTGTGGGAGCTGTACCACGGCCGGCGTGCGGGAGTCCGAACCCAGGAGgtgcgggatc ... cacatcgcagGGGCCCCGGTACTGTAGCAACTTCCCCGCCTTCCCGCCCACCTGCCCCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccatatgcgctacagagtacacaagccgtgtgcgctgttctgtcacatcgcagGGGCCCCGGTACTGTAGCAACTTCCCCGCCTTCCCGCCCACCTGCCCCGAG
                                       ttctgtc  CT-rich tract