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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggggtgagggggcagtgacctgcagcgaccgccaacttccactcagttgcaaagaattgcaactttgcaaggtcttgatgtgtcggccttgtcccctggtgtgttttcatgctttcctccctgacagGGCCGAGTGGGGCCAGCAGCAGACG

Basic information

species Chlamydomonas reinhardtii
transcript EDP03870
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22058746|gb|BQ813092.1|BQ813092
EST:     CATCCGTATGGGCACCATGTTTTACATCTGCCCAGCCCGTGGCGTGCAAG                         GGGCCGAGTGGGGCCAGCAGCAGAACG
genomic: CATCCGTATGGGCACCATGTTTTACATCTGCCCAGCC-GTGGCGTGCAAGgtgcggggtg ... tccctgacagGG-CCGAGTGGGGCCAGCAGCAGA-CG
EST: gi|22058750|gb|BQ813093.1|BQ813093
EST:     ACATCCGTATGGGCACCATGTTTTACATCTGCCCAGCCGTGGCGTGCAAG                         GGCCGAGTGGGGCCAGCAGCAGACG
genomic: ACATCCGTATGGGCACCATGTTTTACATCTGCCCAGCCGTGGCGTGCAAGgtgcggggtg ... tccctgacagGGCCGAGTGGGGCCAGCAGCAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgatgtgtcggccttgtcccctggtgtgttttcatgctttcctccctgacagGGCCGAGTGGGGCCAGCAGCAGACG
 tcttgat  putative branch site (score: 4)
                             tgttttcatgctttcc  putative PPT
                               ttttcat  TA-rich tract