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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGTCGATTTCCTTCGGATGGCTTGCAATTCGCGCCGCAAGGCGCTGGGGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAGgtgcgtgaattgtcactcaattggcgaattggtgttggcggaccgcgccacgagacacgcgcaccgggtgtagacttctgcctgtgacagctcgaccccc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP03867
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22070191|gb|BQ819602.1|BQ819602
EST:     GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAG                         CTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
genomic: GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAGgtgcgtgaat ... cctgtcatagCTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
EST: gi|161811897|gb|FC096087.1|FC096087
EST:     GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAG                         CTGGAAATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
genomic: GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAGgtgcgtgaat ... cctgtcatagCTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
EST: gi|15367962|gb|BI527388.1|BI527388
EST:     GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAG                         CTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
genomic: GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAGgtgcgtgaat ... cctgtcatagCTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
EST: gi|15372354|gb|BI531780.1|BI531780
EST:     GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAG                         CTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
genomic: GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAGgtgcgtgaat ... cctgtcatagCTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
EST: gi|42752540|gb|BP383835.1|BP383835
EST:     GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAG                         CTGGAGATGCTG
genomic: GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAGgtgcgtgaat ... cctgtcatagCTGGAGATGCTG
EST: gi|15693722|gb|BI718027.1|BI718027
EST:     GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAG                         CTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
genomic: GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAGgtgcgtgaat ... cctgtcatagCTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
EST: gi|161806285|gb|FC090925.1|FC090925
EST:     GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAG                         CTGGAAATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
genomic: GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAGgtgcgtgaat ... cctgtcatagCTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
EST: gi|161822561|gb|FC108458.1|FC108458
EST:     GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAG                         CTGGAAATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
genomic: GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAGgtgcgtgaat ... cctgtcatagCTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
EST: gi|16072005|gb|BI874001.1|BI874001
EST:     GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAG                         CTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
genomic: GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAGgtgcgtgaat ... cctgtcatagCTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
EST: gi|15373288|gb|BI532714.1|BI532714
EST:     GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAG                         CTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG
genomic: GGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAGgtgcgtgaat ... cctgtcatagCTGGAGATGCTGAACATGGACCCCACCTTCCTCAACCGCAACGTGAACGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACGTCGATTTCCTTCGGATGGCTTGCAATTCGCGCCGCAAGGCGCTGGGGCATCCGGAGCTGGATCCCCTGGAGTTTTACGCCTACATTATGCCAAAGgtgcgtgaattgtcactcaattggcgaattggtgttggcggaccgcgccacgagacacgcgcaccgggtgtagacttctgcctgtgacagctcgaccccc

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgcct