1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgctgctgccgcaactgctaacccccccttgatgttccccaagatggtctaccgtctaccacatccttaactaataatgaatgtacccccccccccgcagGGCCTCTGACACCGCCACCACCAAGAACAAGATGATGTACGCCAGCACCAAGGACTTCCTCAAGTCCTACCTGGACGGACTGGGCGCGGAGCTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP03860 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCAACGCCGACACGAACCAGACCGTCAACAAGCTGGTGTTCGTGCACTG GGCCTCTGACACCGCCACCACCAAGAACAAGATGATGTACGCCAGCACCAAEST: gi|14240904|gb|BG859720.1|BG859720
genomic: CTCAACGCCGACACGAACCAGACCGTCAACAAGCTGGTGTTCGTGCACTGgtgggtgggg ... ccccccgcagGGCCTCTGACACCGCCACCACCAAGAACAAGATGATGTACGCCAGCACCAA
EST: CTCAACGCCGACACGAACCAGACCGTCAACAAGCTGGTGTTCGTGCACTG GGCCTCTGACACCGCCACCACCAAGAACAAGATGATGTACGCCAGCACCAA
genomic: CTCAACGCCGACACGAACCAGACCGTCAACAAGCTGGTGTTCGTGCACTGgtgggtgggg ... ccccccgcagGGCCTCTGACACCGCCACCACCAAGAACAAGATGATGTACGCCAGCACCAA
ggtctaccgtctaccacatccttaactaataatgaatgtacccccccccccgcagGGCCTCTGACACCGCCACCACCAAGAACAAGATGATGTACGCCAGCACCAAGGACTTCCTCAAGTCCTACCTGGACGGACTGGGCGCGGAGCTGCAG
aactaat putative branch site (score: 2)
tgtaccccccccccc putative PPT
ttaactaataatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctgctgccgcaactgctaacccccccttgatgttccccaagatggtctaccgtctaccacatccttaactaataatgaatgtacccccccccccgcagGGCCTCTGACACCGCCACCACCAAGAACAAGATGATGTACGCCAGCACCAAGGACTTCCTCAAGTCCTACCTGGACGGACTGGGCGCGGAGCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - -aaccccc
- - - - - - - - - - - - - - ttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgt