Sequence
atgc intronic sequence ATGC exonic sequence...ccaggcgttgtctcccgccgtgtgttggtgtttccaaaccccaaaaccctgagccccaaaaccctgaacgccaaattcctgtgtctccaaacacacgcagGTGGGCCAGCACGCAGGGCATCATGGTGTACGGTCAGGTGTGGGCGTCGGCGTGCTTCATCATCTCATCTACGGCGGGGCTGCTGGAGCAGGCAAACCCA
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP02797 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15702995|gb|BI727300.1|BI727300EST: CTGGGCTTCATGATCTTTGGCATCGTGTTCTTTGCCTACACAGACATCGG GTGGGCCAGCACGCAGGGCATCATGGTGTACGGTCAGGTGTGGGCGTCGGC
genomic: CTGGGCTTCATGATCTTTGGCATCGTGTTCTTTGCCTACACAGACATCGGgtgcgtgcgt ... acacacgcagGTGGGCCAGCACGCAGGGCATCATGGTGTACGGTCAGGTGTGGGCGTCGGC
EST:
gi|16435596|gb|BM000816.1|BM000816EST: CTGGGCTTCATGATCTTTGGCATCGTGTTCTTTGCCTACACAGACATCGG GTGGGCCAGCACGCAGGGCATCATGGTGTACGGTCAGGTGTGGGCGTCGGC
genomic: CTGGGCTTCATGATCTTTGGCATCGTGTTCTTTGCCTACACAGACATCGGgtgcgtgcgt ... acacacgcagGTGGGCCAGCACGCAGGGCATCATGGTGTACGGTCAGGTGTGGGCGTCGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accctgagccccaaaaccctgaacgccaaattcctgtgtctccaaacacacgcagGTGGGCCAGCACGCAGGGCATCATGGTGTACGGTCAGGTGTGGGCGTCGGCGTGCTTCATCATCTCATCTACGGCGGGGCTGCTGGAGCAGGCAAACCCA
aaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccaggcgttgtctcccgccgtgtgttggtgtttccaaaccccaaaaccctgagccccaaaaccctgaacgccaaattcctgtgtctccaaacacacgcagGTGGGCCAGCACGCAGGGCATCATGGTGTACGGTCAGGTGTGGGCGTCGGCGTGCTTCATCATCTCATCTACGGCGGGGCTGCTGGAGCAGGCAAACCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - cgtgtgt
- - - - - - - - - - - - - ggtgttt
- - - - - - - - - - - - - - - - - - aacccca
- - - - - - - - - - - - - - - - - - - ccccaaa
- - - - - - - - - - - - - - - - - - - - - -aaaccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgccaa