Sequence
atgc intronic sequence ATGC exonic sequence...tggcacgtcatcacacccccatggcaccccacgatgacaccccgtcgtctcgaccgtggccccccgccccgcgtcccgcacgcccgccgccccctcgcagTGTTCTTCGCGCTGCACGGCTCACTGGGCTTCATGATCTTTGGCATCGTGTTCTTTGCCTACACAGACATCGG
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP02797 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15702995|gb|BI727300.1|BI727300EST: CTGCGTGCCCAGCCGCTGGGCCGACCTACACAGCGTCAGCTGGGCGGCGG TGTTCTTCGCGCTGCACGGCTCACTGGGCTTCATGATCTTTGGCATCGTGT
genomic: CTGCGTGCCCAGCCGCTGGGCCGACCTACACAGCGTCAGCTGGGCGGCGGgtgggtgtgg ... cccctcgcagTGTTCTTCGCGCTGCACGGCTCACTGGGCTTCATGATCTTTGGCATCGTGT
EST:
gi|16435596|gb|BM000816.1|BM000816EST: CTGCGTGCCCAGCCGCTGGGCCGACCTACACAGCGTCAGCTGGGCGGCGG TGTTCTTCGCGCTGCACGGCTCACTGGGCTTCATGATCTTTGGCATCGTGT
genomic: CTGCGTGCCCAGCCGCTGGGCCGACCTACACAGCGTCAGCTGGGCGGCGGgtgggtgtgg ... cccctcgcagTGTTCTTCGCGCTGCACGGCTCACTGGGCTTCATGATCTTTGGCATCGTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgtctcgaccgtggccccccgccccgcgtcccgcacgcccgccgccccctcgcagTGTTCTTCGCGCTGCACGGCTCACTGGGCTTCATGATCTTTGGCATCGTGTTCTTTGCCTACACAGACATCGG
cccgccgccccctc CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggcacgtcatcacacccccatggcaccccacgatgacaccccgtcgtctcgaccgtggccccccgccccgcgtcccgcacgcccgccgccccctcgcagTGTTCTTCGCGCTGCACGGCTCACTGGGCTTCATGATCTTTGGCATCGTGTTCTTTGCCTACACAGACATCGG
- - - - - -cacaccc
- - - - - - acacccc
- - - - - - - - - - - - -accccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccgcac