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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGCTGTTTATTCGCACCATGGTCATGGTGGGCGTGTTCTTCTTCCCTGTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAAgtgagcagggcatcagagaccttccgggctggcctgcacgccttgcgctgttgctacagtgctttaaatacacacatatgaatgctcctgtgtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP02796
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9027658|gb|BE237698.1|BE237698
EST:     GTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAA                         GGTGGCTGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCC
genomic: GTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAAgtgagcaggg ... ctgtgtgcagGGTGGCTGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCC
EST: gi|15704744|gb|BI729049.1|BI729049
EST:     GTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAA                         GGTGGCCGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCC
genomic: GTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAAgtgagcaggg ... ctgtgtgcagGGTGGCTGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCC
EST: gi|15704745|gb|BI729050.1|BI729050
EST:     GTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAA                         GGTGGCTGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCC
genomic: GTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAAgtgagcaggg ... ctgtgtgcagGGTGGCTGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCC