Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9027658|gb|BE237698.1|BE237698EST: GTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAA GGTGGCTGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCC
genomic: GTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAAgtgagcaggg ... ctgtgtgcagGGTGGCTGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCC
EST:
gi|15704744|gb|BI729049.1|BI729049EST: GTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAA GGTGGCCGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCC
genomic: GTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAAgtgagcaggg ... ctgtgtgcagGGTGGCTGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCC
EST:
gi|15704745|gb|BI729050.1|BI729050EST: GTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAA GGTGGCTGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCC
genomic: GTCTTCATCATGATTAACGACGATTACAAGTACACGTCCTTCCTCGACAAgtgagcaggg ... ctgtgtgcagGGTGGCTGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgcgctgttgctacagtgctttaaatacacacatatgaatgctcctgtgtgcagGGTGGCTGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCCCAGGCCCCGGAAGGAGCGGCACGGGGAAGTGCGCGGGGAAAGGCGCACA
tgctcct CT-rich tract
tttaaataca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagcagggcatcagagaccttccgggctggcctgcacgccttgcgctgttgctacagtgctttaaatacacacatatgaatgctcctgtgtgcagGGTGGCTGCCGCTAAGGCTGCCAAGTCGTCGGAGTAAGGCGCGCTGGAGCCCAGGCCCCGGAAGGAGCGGCACGGGGAAGTGCGCGGGGAAAGGCGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG