1 5' 3' | 2 5' 3' |
...tgcatacggtacggtacggaggcgcctgcaccgcacccagtgtgactcattgagtgagtaacgcccctcacaccacacgtgcgctgtgccgccgccgcagACTCGCTGCTGTACGACGAGCGGTGCCACCTGCCGCGCACCACGCCGCCGCCCACGCTGTCAGACGGGCGGTGTGTGAAGGATGTGGTGGAGGCGGAGGA
species | Chlamydomonas reinhardtii |
transcript | EDP02678 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGTCGCAG ACTCGCTGCTGTACGACGAGCGGTGCCACCTGCCGCGCACCACGCCGCCGCEST: gi|16072764|gb|BI874760.1|BI874760
genomic: GAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGTCGCAGgtagggcaca ... gccgccgcagACTCGCTGCTGTACGACGAGCGGTGCCACCTGCCGCGCACCACGCCGCCGC
EST: GAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGTCGCAG ACTCGCTGCTGTACGACGAGCGGTGCCACCTGCCGCGCACCACGCCGCCGCEST: gi|15697117|gb|BI721422.1|BI721422
genomic: GAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGTCGCAGgtagggcaca ... gccgccgcagACTCGCTGCTGTACGACGAGCGGTGCCACCTGCCGCGCACCACGCCGCCGC
EST: GAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGTCGCAG ACTCGCTGCTGTACGACGAGCGGTGCCACCTGCCGCGCACCACGCCGCCGC
genomic: GAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGTCGCAGgtagggcaca ... gccgccgcagACTCGCTGCTGTACGACGAGCGGTGCCACCTGCCGCGCACCACGCCGCCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatacggtacggtacggaggcgcctgcaccgcacccagtgtgactcattgagtgagtaacgcccctcacaccacacgtgcgctgtgccgccgccgcagACTCGCTGCTGTACGACGAGCGGTGCCACCTGCCGCGCACCACGCCGCCGCCCACGCTGTCAGACGGGCGGTGTGTGAAGGATGTGGTGGAGGCGGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
-gcatacg
- - - - - - - - - - - - cctgcac
- - - - - - - - - - - - - - - - gcaccca
- - - - - - - - - - - - - - - - - - - - - - actcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgtgcg