Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16433055|gb|BI998281.1|BI998281EST: GAGATGACGGAGGAAGAGAAGCACAAGGAAATGGACAAGTCTCTCAGCAG CTGGTGGAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGT
genomic: GAGATGACGGAGGAAGAGAAGCACAAGGAAATGGACAAGTCTCTCAGCAGgtgagagttt ... aacgccgcagCTGGTGGAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGT
EST:
gi|16072764|gb|BI874760.1|BI874760EST: GAGATGACGGAGGAAGAGAAGCACAAGGAAATGGACAAGTCTCTCAGCAG CTGGTGGAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGT
genomic: GAGATGACGGAGGAAGAGAAGCACAAGGAAATGGACAAGTCTCTCAGCAGgtgagagttt ... aacgccgcagCTGGTGGAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGT
EST:
gi|15697117|gb|BI721422.1|BI721422EST: GAGATGACGGAGGAAGAGAAGCACAAGGAAATGGACAAGTCTCTCAGCAG CTGGTGGAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGT
genomic: GAGATGACGGAGGAAGAGAAGCACAAGGAAATGGACAAGTCTCTCAGCAGgtgagagttt ... aacgccgcagCTGGTGGAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gacctgctggccatcgtgccatcgccacctcccttcacctcgcccaacgccgcagCTGGTGGAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGTCGCAG
agctgac putative branch site (score: 3)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagagtttcggacgtcgagcgggtcgacaggagcgagacgggcacctgacctgcctcagctgacctgctggccatcgtgccatcgccacctcccttcacctcgcccaacgccgcagCTGGTGGAAGGAGTACGCGTCGCGTAAGAACGATGAGGAGGAGGAGCATGTCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA