1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acggtcttccagttctagtcgtccgcccacttgacacgaccccgtgactgaccgtgtcatccgcctcctctcctgcgtcgcgatcctttctgctctccagTGGTGTGGTGGTGTACAACCACATGAAGCTGCAGATGATTAAGAACAAGGTGGCGGCCACTGGCGGCGGCAAGGGCGACGAGGAGAAACCCAAGGACAGC
species | Chlamydomonas reinhardtii |
transcript | EDP02659 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGCGCCCGTCACCACCATCAACCTGCTGGGTTACGCCTTCTGCTGCAG TGGTGTGGTGGTGTACAACCACATGAAGCTGCAGATGATTAAGAACAAGGT
genomic: AAGGCGCCCGTCACCACCATCAACCTGCTGGGTTACGCCTTCTGCTGCAGgtgggttcgg ... tgctctccagTGGTGTGGTGGTGTACAACCACATGAAGCTGCAGATGATTAAGAACAAGGT
gactgaccgtgtcatccgcctcctctcctgcgtcgcgatcctttctgctctccagTGGTGTGGTGGTGTACAACCACATGAAGCTGCAGATGATTAAGAACAAGGTGGCGGCCACTGGCGGCGGCAAGGGCGACGAGGAGAAACCCAAGGACAGC
gactgac putative branch site (score: 2)
tcctttctgctctcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acggtcttccagttctagtcgtccgcccacttgacacgaccccgtgactgaccgtgtcatccgcctcctctcctgcgtcgcgatcctttctgctctccagTGGTGTGGTGGTGTACAACCACATGAAGCTGCAGATGATTAAGAACAAGGTGGCGGCCACTGGCGGCGGCAAGGGCGACGAGGAGAAACCCAAGGACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - -cgcccac
- - - - - - - - - - - - - - - - gacacga