1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCTGCTCGACGGTCGGGTTCATTTGCGTCCGCGTTCTCAAGCTTGTCAAGTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTGgtaagcaacacagatgggtgtggtaggacaggacggggcaggcacgctggagccgcaacaaaaccgctgatgttcgccgtgaccggcgctccctctgcgg...
species | Chlamydomonas reinhardtii |
transcript | EDP02659 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTG GCCTGCTGTACGCCGGCAGCCTGTGGCTGTCCAACTCGGCCTACCTCTACCEST: gi|15700732|gb|BI725037.1|BI725037
genomic: GTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTGgtaagcaaca ... gccctgccagGCCTGCTGTACGCCGGCAGCCTGTGGCTGTCCAACTCGGCCTACCTCTACC
EST: GTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTG GCCTGCTGTACGCCGGCAGCCTGTGGCTGNCCAACTCGGCCTACCTCTACCEST: gi|16437305|gb|BM002525.1|BM002525
genomic: GTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTGgtaagcaaca ... gccctgccagGCCTGCTGTACGCCGGCAGCCTGTGGCTGTCCAACTCGGCCTACCTCTACC
EST: GTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTG GCCTGCTGTACGCCGGCAGCCTGTGGCTGTCCAACTCGGCCTACCTCTACCEST: gi|16437480|gb|BM002700.1|BM002700
genomic: GTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTGgtaagcaaca ... gccctgccagGCCTGCTGTACGCCGGCAGCCTGTGGCTGTCCAACTCGGCCTACCTCTACC
EST: GTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTG GCCTGCTGTACGCCGGCAGCCTGTGGCTGTCCAACTCGGCCTACCTCTACCEST: gi|23359350|gb|BU647170.1|BU647170
genomic: GTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTGgtaagcaaca ... gccctgccagGCCTGCTGTACGCCGGCAGCCTGTGGCTGTCCAACTCGGCCTACCTCTACC
EST: GTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTG GCCTGCTGTACGCCGGCAGCCTGTGGCTGTCCAACTCGGCCTACCTCTACCEST: gi|22073666|gb|BQ823004.1|BQ823004
genomic: GTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTGgtaagcaaca ... gccctgccagGCCTGCTGTACGCCGGCAGCCTGTGGCTGTCCAACTCGGCCTACCTCTACC
EST: GTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTG GCCTGCTGTACGCCGGCAGCCTGTGGCTGTTCAACTCGGCCTACCTTTACC
genomic: GTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTGgtaagcaaca ... gccctgccagGCCTGCTGTACGCCGGCAGCCTGTGGCTGTCCAACTCGGCCTACCTCTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGCTCGACGGTCGGGTTCATTTGCGTCCGCGTTCTCAAGCTTGTCAAGTCGCACAACATGACTCCGCGCGAGTACTACACGCGTGTGATGCCAATTGgtaagcaacacagatgggtgtggtaggacaggacggggcaggcacgctggagccgcaacaaaaccgctgatgttcgccgtgaccggcgctccctctgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttcgc