1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGCTGTGGAGCGGCCGGCTGTTCGCGCTGTGCTGCAAGCAGgtgcgcggagtgcgaggcagcgtgtgcgtgtgcgtgtgcggcagggcggcaggggagagggagatgaggaaggaagtgaggggcagcaacaggttggccg...
species | Chlamydomonas reinhardtii |
transcript | EDP01964 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCACGGCGAGCTGTGGAGCGGCCGCCTGTTCGCGCTGTGCTGCAAGCAG CTGGGTGCGGACGTGGAGTTCATGGACACGCGCGACGTGCTGGTGGTGACGEST: gi|10791709|gb|AV629075.1|AV629075
genomic: GCCACGGCGAGCTGTGGAGCGGCCGGCTGTTCGCGCTGTGCTGCAAGCAGgtgcgcggag ... ccccgggcagCTGGGTGCGGACGTGGAGTTCATGGACACGCGCGACGTGCTGGTGGTGACG
EST: GCCACGGCGAGCTGTGGAGCGGCCGCCTGTTCGCGCTGTGCTGCAAGCAG CTGGGTGCGGACGTGGAGTTCATGGACACGCGCGACGTGCTEST: gi|10793899|gb|AV631265.1|AV631265
genomic: GCCACGGCGAGCTGTGGAGCGGCCGGCTGTTCGCGCTGTGCTGCAAGCAGgtgcgcggag ... ccccgggcagCTGGGTGCGGACGTGGAGTTCATGGACACGCGCGACGTGCT
EST: GCCACGGCGAGCTGTGGAGCGGCCGCCTGTTCGCGCTGTGCTGCAAGCAG CTGGGTGCGGACGTGGAGTTCATGGACACGCGCGACGTGCTGGTGGTGACGEST: gi|6547811|gb|AV393595.1|AV393595
genomic: GCCACGGCGAGCTGTGGAGCGGCCGGCTGTTCGCGCTGTGCTGCAAGCAGgtgcgcggag ... ccccgggcagCTGGGTGCGGACGTGGAGTTCATGGACACGCGCGACGTGCTGGTGGTGACG
EST: GCCACGGCGAGCTGTGGAGCGGCCGCCTGTTCGCGCTGTGCTGCAAGCAG CTGGGTGCGGACGTGGAGTTCATGGACACGCGCGACGTGCTGGTGGTGACG
genomic: GCCACGGCGAGCTGTGGAGCGGCCGGCTGTTCGCGCTGTGCTGCAAGCAGgtgcgcggag ... ccccgggcagCTGGGTGCGGACGTGGAGTTCATGGACACGCGCGACGTGCTGGTGGTGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGCTGTGGAGCGGCCGGCTGTTCGCGCTGTGCTGCAAGCAGgtgcgcggagtgcgaggcagcgtgtgcgtgtgcgtgtgcggcagggcggcaggggagagggagatgaggaaggaagtgaggggcagcaacaggttggccg
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaca