1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccgggcctgggcggccgcccttcacccgcctccctcggcctcgcccctcacggcctcacccctcacggcctcactccccctctctcccgcccgcccgcagCCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGCTGTGGAGCGGCCGGCTGTTCGCGCTGTGCTGCAAGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP01964 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATGGATGATATCACCAACCTGAAGGCCATGCTTCAGGCCATGAGCATTG CCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGCEST: gi|10791709|gb|AV629075.1|AV629075
genomic: CATGGACGATATCACGAACCTGAAGGCCATGCTTCAGGCCATGAGCATTGgtgagagctc ... ccgcccgcagCCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGC
EST: CATGGATGATATCACCAACCTGAAGGCCATGCTTCAGGCCATGAGCATTG CCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGCEST: gi|10793899|gb|AV631265.1|AV631265
genomic: CATGGACGATATCACGAACCTGAAGGCCATGCTTCAGGCCATGAGCATTGgtgagagctc ... ccgcccgcagCCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGC
EST: CATGGATGATATCACCAACCTGAAGGCCATGCTTCAGGCCATGAGCATTG CCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGCEST: gi|6547811|gb|AV393595.1|AV393595
genomic: CATGGACGATATCACGAACCTGAAGGCCATGCTTCAGGCCATGAGCATTGgtgagagctc ... ccgcccgcagCCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGC
EST: CATGGATGATATCACCAACCTGAAGGCCATGCTTCAGGCCATGAGCATTG CCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGC
genomic: CATGGACGATATCACGAACCTGAAGGCCATGCTTCAGGCCATGAGCATTGgtgagagctc ... ccgcccgcagCCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGC
cctcacggcctcacccctcacggcctcactccccctctctcccgcccgcccgcagCCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGCTGTGGAGCGGCCGGCTGTTCGCGCTGTGCTGCAAGCAG
gcctcac putative branch site (score: 3)
cccctcacggcctcac CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgggcctgggcggccgcccttcacccgcctccctcggcctcgcccctcacggcctcacccctcacggcctcactccccctctctcccgcccgcccgcagCCGGCATGTCCACGGACGCCTTCAGCGACTTCGTGGTGGGCCACGGCGAGCTGTGGAGCGGCCGGCTGTTCGCGCTGTGCTGCAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - cacccgc
- - - - - - - - - - - - - - - - - - - - - - ccctcac