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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtcttggcccctaccttggctgcgtgggttggccagtgcacatctcggaattggcgacgatggccttctctcttgcggcccgtgtcctcgcattgcagcccaaacaactcgccttcctcggcagctcaacggcctctgacactttgcctccttatgctttcagGGCCACGACCTGCCGCCGTGGCGCAGCCCCCGCGCGCTCATGACCAACTGGCTACCCGCGCGCTTCACCGACTCGGTGCACGCCCCGCCCGCGTGCGGCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP01938
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6550986|gb|AV396770.1|AV396770
EST:     CCCTGGTGAACCTCGTGTCATCGGCCCTGCAAAAAGAGGCTGCTGCCCGG                         GGCCACGACCTGCCGCCGTGGCGCAGCCCCCGAGCGCTCATGACGAACTGG
genomic: CCCTGGTGAACCTCGTGTCATCGGCCCTGCAAAAAGAGGCTGCTGCCCGGgtacgtcttg ... atgctttcagGGCCACGACCTGCCGCCGTGGCGCAGCCCCCGCGCGCTCATGACCAACTGG
EST: gi|6548512|gb|AV394296.1|AV394296
EST:     CCCTGGTGAACCTCGTGTCATCGGCCCTGCAAAAAGAGGCTGCTGCCCGG                         GGCCACGACCTGCCGCCGTGGCGCAG
genomic: CCCTGGTGAACCTCGTGTCATCGGCCCTGCAAAAAGAGGCTGCTGCCCGGgtacgtcttg ... atgctttcagGGCCACGACCTGCCGCCGTGGCGCAG
EST: gi|10792177|gb|AV629543.1|AV629543
EST:     CCCTGGTGAACCTCGTGTCATCGGCCCTGCAAAAAGAGGCTGCTGCCCGG                         GGCCACGACCTGCCGCCGTGGCGCAGCCCCCGCGCGCTCATGACGAACTGG
genomic: CCCTGGTGAACCTCGTGTCATCGGCCCTGCAAAAAGAGGCTGCTGCCCGGgtacgtcttg ... atgctttcagGGCCACGACCTGCCGCCGTGGCGCAGCCCCCGCGCGCTCATGACCAACTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgccttcctcggcagctcaacggcctctgacactttgcctccttatgctttcagGGCCACGACCTGCCGCCGTGGCGCAGCCCCCGCGCGCTCATGACCAACTGGCTACCCGCGCGCTTCACCGACTCGGTGCACGCCCCGCCCGCGTGCGGCC
                         ctctgac  putative branch site (score: 3)
                                      cctccttatgctttc  putative PPT