1 5' 3' | 2 5' 3' |
GCCCGCTGTGGCTTGGTCGCTACGGTTCGTCAGGGTATATCAACGGACTTTCATCATATGCGTCACGCATTCCTGCTCGTTCAGCTTTACCCTGGGCAAGgtacgccaattcgcatggtttcgccgctcagcagggtcgcgacgttcgcacaccgcttataaaagcgttccatgcgtcattctatatctgcatatgcttg...
species | Chlamydomonas reinhardtii |
transcript | EDP01938 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCATCATATGCGTCACGCATTCCTGCTCGCTCAGCTTTACCCTGGGCAAG GGCCCGCAGTTGTTGTGGACCCGAACTTCCGGGACCGCTTCGTGTACAGCAEST: gi|6548512|gb|AV394296.1|AV394296
genomic: TCATCATATGCGTCACGCATTCCTGCTCGTTCAGCTTTACCCTGGGCAAGgtacgccaat ... cgtgctacagGACCCGCAGTTGTTGTGGACCCGAACTTCCGGGACCGCTTCGTGTACAGCA
EST: CATCATATGCGTCACGCATTCCTGCTCGCTCAGCTTTACCCTGGGCAAG GGCCCGCAGTTGTTGTGGACCCGAACTTCCGGGACCGCTTCGTGTACATCCEST: gi|10792177|gb|AV629543.1|AV629543
genomic: CATCATATGCGTCACGCATTCCTGCTCGTTCAGCTTTACCCTGGGCAAGgtacgccaat ... cgtgctacagGACCCGCAGTTGTTGTGGACCCGAACTTCCGGGACCGCTTCGTGTACA-GC
EST: TCATCATATGCGTCACGCATTCCTGCTCGCTCAGCTTTACCCTGGGCAAG GGCCCGCAGTTGTTGTGGACCCGAACTTCCGGGACCGCTTCGTGTACAGCA
genomic: TCATCATATGCGTCACGCATTCCTGCTCGTTCAGCTTTACCCTGGGCAAGgtacgccaat ... cgtgctacagGACCCGCAGTTGTTGTGGACCCGAACTTCCGGGACCGCTTCGTGTACAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCGCTGTGGCTTGGTCGCTACGGTTCGTCAGGGTATATCAACGGACTTTCATCATATGCGTCACGCATTCCTGCTCGTTCAGCTTTACCCTGGGCAAGgtacgccaattcgcatggtttcgccgctcagcagggtcgcgacgttcgcacaccgcttataaaagcgttccatgcgtcattctatatctgcatatgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctt