Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtttgcatgtgatgtacgctccattcgaggatgttgcggaagcgctgaagatgctgcggccttcggcgcatccttgctacctgcttgcataaccgctgtcgtgttttgccctgcagCTGCCCTATTTGAACAGTATGAAGATGAAGATGTCGATTCTGCTGGGTGTGGCGCACATGAACTTCGGTATCATCAACTCGCTCTACAACAACCTGTACT

Basic information

species Chlamydomonas reinhardtii
transcript EDP01931
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161797562|gb|FC083658.1|FC083658
EST:     CACCGCTGGTGTTTGGTGTGGACCCCATCTGGCACGGCCGCAAGACTGAG                         CTGCCCTATTTGAACAGTATGAAGATGAAGATGTCGATTCTGCTGGGTGTG
genomic: CACCGCTGGTGTTCGGTGTGGACCCCATCTGGCACGGCCGCAAGACTGAGgtgcgtttgc ... tgccctgcagCTGCCCTATTTGAACAGTATGAAGATGAAGATGTCGATTCTGCTGGGTGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcggcgcatccttgctacctgcttgcataaccgctgtcgtgttttgccctgcagCTGCCCTATTTGAACAGTATGAAGATGAAGATGTCGATTCTGCTGGGTGTGGCGCACATGAACTTCGGTATCATCAACTCGCTCTACAACAACCTGTACT
                         gcataac  putative branch site (score: 3)
                                          ttttgccct  putative PPT