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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTATTTGAACAGTATGAAGATGAAGATGTCGATTCTGCTGGGTGTGGCGCACATGAACTTCGGTATCATCAACTCGCTCTACAACAACCTGTACTTCAGgtgtgtcttggtcggcacttctcccaatagctcagggtagcgtggtagtacccatgcttgctcctacgtccatggcctgacacgctgcgccccacgcttgctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01931
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP01931 (Chlamydomonas reinhardtii), 5'ss of exon 10
lower sequence: GLYMA12G07740.1 (Glycine max), 5'ss of exon 13
CCTATTTGAACAGTATGAAGATGAAGATGTCGATTCTGCTGGGTGTGGCGCACATGAACTTCGGTATCATCAACTCGCTCTACAACAACCTGTACTTCAGgtgtgt-cttggtcggcacttctcccaatagctc-agggtagcgtggtagtacccatgcttgctcctacgtccatggcctgacacgctgcgccccacgcttgctgcag
                  ||||||||||||| |||||||||||||||| |||||||||||| || ||  |          | |||    |  | |||  |   |   || | |      | ||| |  |   || |   |  |   | |||  |  |      ||||  |   |     |   |   |   |  || | |   |  ||
------------------AGATGAAGATGTCCATTCTGCTGGGTGTGGTGCACATGAACTTGGGAATTCTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAATTCGCTGGATATAAGgtgctcgcttttcttctaacttctcccagcagttactttttgctttcctttgagtagaatgttgtaacttaatcttcatgatgcttttag

upper sequence: EDP01931 (Chlamydomonas reinhardtii), 5'ss of exon 10
lower sequence: GLYMA11G15730.1 (Glycine max), 5'ss of exon 13
CCTATTTGAACAGTATGAAGATGAAGATGTCGATTCTGCTGGGTGTGGCGCACATGAACTTCGGTATCATCAACTCGCTCTACAACAACCTGTACTTCAG-
                  ||||||||||||| ||||||||||||||||  ||||||||||| || ||  |          | |||    |  | |||  |    | ||| | |      | ||| |   |    ||   |  |   | |||     |  |    ||||  |   |   | | | |   |   |  ||   |   |  ||
------------------AGATGAAGATGTCCATTCTGCTGGGTGTGGTCCACATGAACTTGGGAATTCTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAACTCTCTGGATATAAGgtgctcacttttcttccaaattctcccagcagtttttgttttgctttcctttgagtagaacgttataacttaatcttcataatgcttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161797562|gb|FC083658.1|FC083658
EST:     CACATGAACTTCGGTATCATCAACTCGCTCTACAACAACCTGTACTTCAG                         GGACTGGTTGTCCGTCTGGTGCGAGTTCGTGCCGCAGATGATTTTCCTGAA
genomic: CACATGAACTTCGGTATCATCAACTCGCTCTACAACAACCTGTACTTCAGgtgtgtcttg ... cttgctgcagGGACTGGTTGTCCGTCTGGTGCGAGTTCGTGCCGCAGATGATTTTCCTGAA