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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcggacttttgagccgcctgtactgtcgtccggtgcttggcctcgttttgtcggatgatctgccgatatccaactggagcttgcttgactgaccgcttttctcatccgttgggcgcctcaccttgcctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGTGTACAACACTGGTGCCACCCTCATCCGCGTGCCCATCGCCGCCAATGTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01896
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16438362|gb|BM003582.1|BM003582
EST:     TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|10782557|gb|AV639229.1|AV639229
EST:     TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|16430180|gb|BI995406.1|BI995406
EST:     TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|161822545|gb|FC109261.1|FC109261
EST:     TCCGGTGGCCGCACCGTGGGCTCTGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|6544327|gb|AV390111.1|AV390111
EST:     TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|161822832|gb|FC107143.1|FC107143
EST:     TCCGGTGGCCGCACCGTGGGCTCTGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|161810359|gb|FC099372.1|FC099372
EST:     TCCGGTGGCCGCACCGTGGGCTCTGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|23364520|gb|BU652340.1|BU652340
EST:     TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|161812792|gb|FC099453.1|FC099453
EST:     TCCGGTGGCCGCACCGTGGGCTCTGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|161810056|gb|FC097685.1|FC097685
EST:     TCCGGTGGCCGCACCGTGGGCTCTGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|161801227|gb|FC087073.1|FC087073
EST:     TCCGGTGGCCGCACCGTGGGCTCTGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|7427474|gb|AW661640.1|AW661640
EST:     GGCTCCGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: GGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|16429664|gb|BI994890.1|BI994890
EST:     TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|161820030|gb|FC109703.1|FC109703
EST:     TCCGGTGGCCGCACCGTGGGCTCTGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
EST: gi|161817330|gb|FC100815.1|FC100815
EST:     TCCGGTGGCCGCACCGTGGGCTCTGTCGCTAACGTCACCATCCGCGTCGC                         TTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT
genomic: TCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGCgtgagtcgga ... ctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgactgaccgcttttctcatccgttgggcgcctcaccttgcctacccgcagTTTCGCGACCGAGAAGCCCGCGCTGATCTACTCGAGCATCGAGCTGGTCGTGTACAACACTGGTGCCACCCTCATCCGCGTGCCCATCGCCGCCAATGTG
                                       ccttgcct  CT-rich tract