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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtcctaggaagactttgctgtttgctgcgctgcctaggcatcatgacgcctgtatgacgttgtcttttgaaggaagttcgaggattgcgctgagttgggaccgcacgcaagcaacttatccacgccacggtccctctccatcttcctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP01896
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16438362|gb|BM003582.1|BM003582
EST:     GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
genomic: GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
EST: gi|10782557|gb|AV639229.1|AV639229
EST:     GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAACAAG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
genomic: GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
EST: gi|16430180|gb|BI995406.1|BI995406
EST:     CCAAGCCCAGCAGG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
genomic: CCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
EST: gi|161822545|gb|FC109261.1|FC109261
EST:     GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCT
genomic: GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
EST: gi|6544327|gb|AV390111.1|AV390111
EST:     GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAACAAG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
genomic: GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
EST: gi|161822832|gb|FC107143.1|FC107143
EST:     GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCT
genomic: GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
EST: gi|161810359|gb|FC099372.1|FC099372
EST:     GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCT
genomic: GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
EST: gi|23364520|gb|BU652340.1|BU652340
EST:     GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
genomic: GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
EST: gi|161812792|gb|FC099453.1|FC099453
EST:     GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCT
genomic: GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
EST: gi|161810056|gb|FC097685.1|FC097685
EST:     GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCT
genomic: GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
EST: gi|16429664|gb|BI994890.1|BI994890
EST:     GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
genomic: GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
EST: gi|161820030|gb|FC109703.1|FC109703
EST:     GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCT
genomic: GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC
EST: gi|161817330|gb|FC100815.1|FC100815
EST:     GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGG                         AACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCT
genomic: GCACCAAGTGCAAGGGCAACCTGAAGGGCTGGATGCCCAAGCCCAGCAGGgtgggtccta ... ctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgcacgcaagcaacttatccacgccacggtccctctccatcttcctcttcgcagAACCCTCGCTGGGGCCAGGCTGTGTTCTCCGGTGGCCGCACCGTGGGCTCCGTCGCTAACGTCACCATCCGCGTCGC
                        ccacggtccctctcca  CT-rich tract
            aacttat  TA-rich tract