1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTCTGCGCCGCAACCCCTTTTGCCCTGTGGTGCCCTGTCACCGAGTGGTGGCAGCGGACCTGAACATCGGCGGCTTCTCAGGCGGCTGGgtgagtgggtggtgcactgggggctgcggaggctgggtggaggaggggcggggcgaagagaggttggttggcgcgatgggggtcggggcggggttgaaac...
species | Chlamydomonas reinhardtii |
transcript | EDP01091 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCGAGTGGTGGCAGCGGACCTGAACATCGGCGGCTTCTCAGGCGGCTGG GGCATTTCGGACCCTAAGGTCCAGCGCAAGCGGCGGCTGCTGGAGGGGGAGEST: gi|14236813|gb|BG855629.1|BG855629
genomic: ACCGAGTGGTGGCAGCGGACCTGAACATCGGCGGCTTCTCAGGCGGCTGGgtgagtgggt ... tcaatcgtagGGCATTTCGGACCCTAAGGTCCAGCGCAAGCGGCGGCTGCTGGAGGGGGAG
EST: ACCGAGTGGTGGCAGCGGACCTGAACATCGGCGGCTTCTCAGGCGGCTGG GGCATTTCGGACCCTAAGGTCCAGCGCAAGCGG-GGCT
genomic: ACCGAGTGGTGGCAGCGGACCTGAACATCGGCGGCTTCTCAGGCGGCTGGgtgagtgggt ... tcaatcgtagGGCATTTCGGACCCTAAGGTCCAGCGCAAGCGGCGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTGCGCCGCAACCCCTTTTGCCCTGTGGTGCCCTGTCACCGAGTGGTGGCAGCGGACCTGAACATCGGCGGCTTCTCAGGCGGCTGGgtgagtgggtggtgcactgggggctgcggaggctgggtggaggaggggcggggcgaagagaggttggttggcgcgatgggggtcggggcggggttgaaac
- - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggggt