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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGCTCCGCAAGCTGGCGATGCAGCAGGAGACACAGCGCTGACAGCGTCCGATAAGCCCAACCGCCCGCCGACAGCGTTTGAGAACAGGCTGTATGAGgtgagtacgcaggcgcatgcaggaatgctggcaggtttggcgaaatcatgccgctcattgtgtttcgcgtgcccttcgccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01091
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7427281|gb|AW661447.1|AW661447
EST:     CCGATAAGCCCAACCGCCCGCCGACAGCGTTTGAGAACAGGCTGTATGAG                         CTCTGCAAGTGCATTCCTAAGGGAAAGGTCAGCACGTACGGAGCCATGGCC
genomic: CCGATAAGCCCAACCGCCCGCCGACAGCGTTTGAGAACAGGCTGTATGAGgtgagtacgc ... ttcgccgcagCTCTGCAAGTGCATTCCTAAGGGAAAGGTCAGCACGTACGGAGCCATGGCC
EST: gi|14227519|gb|BG846335.1|BG846335
EST:     CCGATAAGCCCAACCGCCCGCCGACAGCGTTTGAGAACAGGCTGTATGAG                         CTCTGCAAGTGCATTCCTAAGGGAAAGGTCAGCACGTACGGAGCCATGGCC
genomic: CCGATAAGCCCAACCGCCCGCCGACAGCGTTTGAGAACAGGCTGTATGAGgtgagtacgc ... ttcgccgcagCTCTGCAAGTGCATTCCTAAGGGAAAGGTCAGCACGTACGGAGCCATGGCC
EST: gi|14236813|gb|BG855629.1|BG855629
EST:     CCGATAAGCCCAACCGCCCGCCGACAGCGTTTGAGAACAGGCTGTATGAG                         CTCTGCAAGTGCATTCCTAAGGGAAAGGTCAGCACGTACGGAGCCATGGCC
genomic: CCGATAAGCCCAACCGCCCGCCGACAGCGTTTGAGAACAGGCTGTATGAGgtgagtacgc ... ttcgccgcagCTCTGCAAGTGCATTCCTAAGGGAAAGGTCAGCACGTACGGAGCCATGGCC
EST: gi|49460104|gb|BP088017.1|BP088017
EST:     CCGATAAGCCCAACCGCCCGCCGACAGCGTTTGAGAACAGGCTGTATGAG                         CTCTGCAAGTGCATTCCTAAGGGAAAGGTCAGCAC
genomic: CCGATAAGCCCAACCGCCCGCCGACAGCGTTTGAGAACAGGCTGTATGAGgtgagtacgc ... ttcgccgcagCTCTGCAAGTGCATTCCTAAGGGAAAGGTCAGCAC