1 5' 3' | 2 5' 3' | 3 5' 3' |
...acaaaacaaagcgccgagccgaacctcataccatgcctgccactaaacaaactcgtgcctgactgtcgcgccatcgcttccctccctctcccgcccgcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCGTGGCCCAGGAGCTGGTGGAGCAGACCGAGATCTTCGAGCACCTGGTTC
species | Chlamydomonas reinhardtii |
transcript | EDP01074 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTGAAGACCCTGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCAEST: gi|161812394|gb|FC095571.1|FC095571
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTGAAGACCCTGCAGgtgtgtacag ... ccgcccgcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCA
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTGAAGACCCTGCAG ACGAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|161800809|gb|FC084718.1|FC084718
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTGAAGACCCTGCAGgtgtgtacag ... ccgcccgcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTGAAGACCCTGCAG ACGAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCEST: gi|23365824|gb|BU653644.1|BU653644
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTGAAGACCCTGCAGgtgtgtacag ... ccgcccgcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
EST: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTGAAGACCCTGCAG ACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
genomic: ACCCCCTGGGCCTCAAGCCCACCGACCCCGAGGAGCTGAAGACCCTGCAGgtgtgtacag ... ccgcccgcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTC
aacaaactcgtgcctgactgtcgcgccatcgcttccctccctctcccgcccgcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCGTGGCCCAGGAGCTGGTGGAGCAGACCGAGATCTTCGAGCACCTGGTTC
cgccatcgcttccctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaaacaaagcgccgagccgaacctcataccatgcctgccactaaacaaactcgtgcctgactgtcgcgccatcgcttccctccctctcccgcccgcagACCAAGGAGCTGAACAACGGCCGCCTGGCCATGATCGCCATCGCCGCCTTCGTGGCCCAGGAGCTGGTGGAGCAGACCGAGATCTTCGAGCACCTGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- -aaacaaa
- - - - - - - - - - -aacctca
- - - - - - - - - - - - - - - -catgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactgt