1 5' 3' | 2 5' 3' | 3 5' 3' |
...cggctccgcatccttagccttgctgattgccgtcctccatcaatgtgcgccgtagcttccttgcttatgcttattctgtgtttgccctgcatactcgcagACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACCCCGCTGGCTTCCTGGCCACTGCCTCCGTCAAGGATGTCCGTCGCTGGCG
species | Chlamydomonas reinhardtii |
transcript | EDP01074 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCT ACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACCEST: gi|10773511|gb|AV624334.1|AV624334
genomic: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCTgtgagttcct ... atactcgcagACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACC
EST: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCT ACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACCEST: gi|15702037|gb|BI726342.1|BI726342
genomic: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCTgtgagttcct ... atactcgcagACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACC
EST: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCT ACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACCEST: gi|161812394|gb|FC095571.1|FC095571
genomic: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCTgtgagttcct ... atactcgcagACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACC
EST: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCT ACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACCEST: gi|23359144|gb|BU646964.1|BU646964
genomic: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCTgtgagttcct ... atactcgcagACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACC
EST: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCT ACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACCEST: gi|161800809|gb|FC084718.1|FC084718
genomic: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCTgtgagttcct ... atactcgcagACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACC
EST: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCT ACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACCEST: gi|22048920|gb|BQ808459.1|BQ808459
genomic: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCTgtgagttcct ... atactcgcagACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACC
EST: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCT ACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACCEST: gi|16072297|gb|BI874293.1|BI874293
genomic: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCTgtgagttcct ... atactcgcagACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACC
EST: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCT ACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACC
genomic: CACCGTGAGCGGCAAGGCCGGCGCCCCCGTGCCCGAGGACGTCCTGGCCTgtgagttcct ... atactcgcagACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACC
tgcgccgtagcttccttgcttatgcttattctgtgtttgccctgcatactcgcagACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACCCCGCTGGCTTCCTGGCCACTGCCTCCGTCAAGGATGTCCGTCGCTGGCG
ttattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggctccgcatccttagccttgctgattgccgtcctccatcaatgtgcgccgtagcttccttgcttatgcttattctgtgtttgccctgcatactcgcagACGCCAAGACCCTGCCCGGTGTTACCGCTCCCTTCGACAACGTGTTCGACCCCGCTGGCTTCCTGGCCACTGCCTCCGTCAAGGATGTCCGTCGCTGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - atgtgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt