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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGAAGGGCCCACTGCTGCGCAAATCGGATCGCATCCAGGAGCTAGCTCAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGGgtaaggaaagcggccacgcgccgtgaagcggcggtttcagcgcagtcggcttgtagattttgaggtaccggtaatctggggccagtttctgtgagtttcttcgaagccattgtgctatctgacaaacgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01040
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15703035|gb|BI727340.1|BI727340
EST:     CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGG                         GCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA
genomic: CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGGgtaaggaaag ... acaaacgcagGCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA
EST: gi|15702723|gb|BI727028.1|BI727028
EST:     CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGG                         GCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA
genomic: CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGGgtaaggaaag ... acaaacgcagGCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA
EST: gi|23365712|gb|BU653532.1|BU653532
EST:     CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGG                         GCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA
genomic: CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGGgtaaggaaag ... acaaacgcagGCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA
EST: gi|16435635|gb|BM000855.1|BM000855
EST:     CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGG                         GCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA
genomic: CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGGgtaaggaaag ... acaaacgcagGCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA