1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaggaaagcggccacgcgccgtgaagcggcggtttcagcgcagtcggcttgtagattttgaggtaccggtaatctggggccagtttctgtgagtttcttcgaagccattgtgctatctgacaaacgcagGCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCAAGATATTCTGGATCCAAAGGAGATGTACGACATCTGCCGTACCGACTTC
species | Chlamydomonas reinhardtii |
transcript | EDP01040 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGG GCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCAEST: gi|15702723|gb|BI727028.1|BI727028
genomic: CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGGgtaaggaaag ... acaaacgcagGCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA
EST: CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGG GCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCAEST: gi|23365712|gb|BU653532.1|BU653532
genomic: CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGGgtaaggaaag ... acaaacgcagGCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA
EST: CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGG GCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCAEST: gi|16435635|gb|BM000855.1|BM000855
genomic: CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGGgtaaggaaag ... acaaacgcagGCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA
EST: CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGG GCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA
genomic: CAGGACTTCATTTCCACTTCTATAGGGAAAGGGAAGCCCTATATTGCAGGgtaaggaaag ... acaaacgcagGCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCA
tggggccagtttctgtgagtttcttcgaagccattgtgctatctgacaaacgcagGCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCAAGATATTCTGGATCCAAAGGAGATGTACGACATCTGCCGTACCGACTTC
atctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaaagcggccacgcgccgtgaagcggcggtttcagcgcagtcggcttgtagattttgaggtaccggtaatctggggccagtttctgtgagtttcttcgaagccattgtgctatctgacaaacgcagGCACATCCGGCCCATGCCCGACGCGTGCGTTGACTTGTGGAAGACGGCCCAAGATATTCTGGATCCAAAGGAGATGTACGACATCTGCCGTACCGACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG