1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caggagtttttggcgctgcgcaggttctagccgaagccaaagcccacattgctgacccgccctcttccatcctcctgcaccctgaattcgccacccgcagCACCCGGGCTTTGACTTCTCCCAAGCCAAGTTCAATGGGCAGGTGCCCAACCCGCGCACCTTCATGCGGGACCTGGATGCGGCACCGCCGGAGGAGCCGT
species | Chlamydomonas reinhardtii |
transcript | EDP01028 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCAGGCGGAG CACCCGGGCTTTGACTTCTCCCAAGCCAAGTTCAATGGGCAGGTGCCCAACEST: gi|16429878|gb|BI995104.1|BI995104
genomic: TCCAGGCGGAGgtgggagtgg ... ccacccgcagCACCCGGGCTTTGACTTCTCCCAAGCCAAGTTCAATGGGCAGGTGCCCAAC
EST: CACAGCAGGCGGACCAGCAGCGGCTCATGCTGGAGCGATTCCAGGCGGAG CACCCGGGCTTTGACTTCTCCCAAGCCAAGTTCAATGGGCAGGTGCCCAACEST: gi|15693124|gb|BI717429.1|BI717429
genomic: CACAGCAGGCGGACCAGCAGCGGCTCATGCTGGAGCGATTCCAGGCGGAGgtgggagtgg ... ccacccgcagCACCCGGGCTTTGACTTCTCCCAAGCCAAGTTCAATGGGCAGGTGCCCAAC
EST: CACAGCAGGCGGACCAGCAGCGGCTCATGCTGGAGCGATTCCAGGCGGAG CACCCGGGCTTTGACTTCTCCCAAGCCAAGTTCAATGGGCAGGTGCCCAAC
genomic: CACAGCAGGCGGACCAGCAGCGGCTCATGCTGGAGCGATTCCAGGCGGAGgtgggagtgg ... ccacccgcagCACCCGGGCTTTGACTTCTCCCAAGCCAAGTTCAATGGGCAGGTGCCCAAC
acattgctgacccgccctcttccatcctcctgcaccctgaattcgccacccgcagCACCCGGGCTTTGACTTCTCCCAAGCCAAGTTCAATGGGCAGGTGCCCAACCCGCGCACCTTCATGCGGGACCTGGATGCGGCACCGCCGGAGGAGCCGT
tgctgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggagtttttggcgctgcgcaggttctagccgaagccaaagcccacattgctgacccgccctcttccatcctcctgcaccctgaattcgccacccgcagCACCCGGGCTTTGACTTCTCCCAAGCCAAGTTCAATGGGCAGGTGCCCAACCCGCGCACCTTCATGCGGGACCTGGATGCGGCACCGCCGGAGGAGCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - tttttgg
- - - - - - - - - - - - - - - - - agccaaa
- - - - - - - - - - - - - - - - - - - - -gcccaca