1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagctggcctgctaaagaatctgcagcgcccacagcacctatgaccattgctgacacgtctggatgtctgtgggcgtgtgtaaaaaacgtggtgccgcagGGTGAGCCGTGGCGCAGTGCCATTGCGGGCCATGACCTTGACCCCGCCACACAGCAGGCGGACCAGCAGCGGCTCATGCTGGAGCGATTCCAGGCGGAG
species | Chlamydomonas reinhardtii |
transcript | EDP01028 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGATGGCGTGCTGCATGTCTCGCTGACGAAACTAGAAGAG GGTGAGCCGTGGCGCAGTGCCATTGCGGGCCATGACCTTGACCCCGCCACA
genomic: AGGATGGCGTGCTGCATGTCTCGCTGACGAAACTAGAAGAGgtgagtggct ... ggtgccgcagGGTGAGCCGTGGCGCAGTGCCATTGCGGGCCATGACCTTGACCCCGCCACA
cattgctgacacgtctggatgtctgtgggcgtgtgtaaaaaacgtggtgccgcagGGTGAGCCGTGGCGCAGTGCCATTGCGGGCCATGACCTTGACCCCGCCACACAGCAGGCGGACCAGCAGCGGCTCATGCTGGAGCGATTCCAGGCGGAG
tgctgac putative branch site (score: 2)
tgtaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagctggcctgctaaagaatctgcagcgcccacagcacctatgaccattgctgacacgtctggatgtctgtgggcgtgtgtaaaaaacgtggtgccgcagGGTGAGCCGTGGCGCAGTGCCATTGCGGGCCATGACCTTGACCCCGCCACACAGCAGGCGGACCAGCAGCGGCTCATGCTGGAGCGATTCCAGGCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - -gcccaca
- - - - - - - - - - - - - - - - - gcaccta
- - - - - - - - - - - - - - - - - - - - - - - - - - -acacgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaacg