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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtccagtgcgcaggcccacagctgcgcctgctcatgctttggtgtcacagcttgatcgcagccgcgtggtggccaccgctgctgctgtgccggcaggcgccatcagcaggtctgacgcctgttcatggcaccgctctgtgttcacagGCCTAGACGACTGGCACCTAGCGGCTATGGAGCAGCTCACCGGCACCACCAAGTCGGTGGTCATACCCGCGGCACTGCTGAGGGGTCACATCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP00510
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22063158|gb|BQ815095.1|BQ815095
EST:     CAGCCACCAGACGGACGAGCTCGTGGAGGGCGTGAGGGCCTGGCTGGCAG                         GCCTAGACGACTGGCACCTAGCGGCTATGGAGCAGCTCACCGGCACCACCA
genomic: CAGCCACCAGACGGACGAGCTCGTGGAGGGCGTGAGGGCCTGGCTGGCAGgtgggtccag ... gtgttcacagGCCTAGACGACTGGCACCTAGCGGCTATGGAGCAGCTCACCGGCACCACCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaggcgccatcagcaggtctgacgcctgttcatggcaccgctctgtgttcacagGCCTAGACGACTGGCACCTAGCGGCTATGGAGCAGCTCACCGGCACCACCAAGTCGGTGGTCATACCCGCGGCACTGCTGAGGGGTCACATCA
                 gtctgac  putative branch site (score: 3)