1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTGCGCCAGGACGCGGGCTGGCGCTTCCTCATGTCGGACAACATCGCGGGCAGCCACCAGACGGACGAGCTCGTGGAGGGCGTGAGGGCCTGGCTGGCAGgtgggtccagtgcgcaggcccacagctgcgcctgctcatgctttggtgtcacagcttgatcgcagccgcgtggtggccaccgctgctgctgtgccggcaggcgccatcagcaggtctgacgcctgttcatggcaccgctctgtgttcacag
species | Chlamydomonas reinhardtii |
transcript | EDP00509 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGCCACCAGACGGACGAGCTCGTGGAGGGCGTGAGGGCCTGGCTGGCAG GCCTAGACGACTGGCACCTAGCGGCTATGGAGCAGCTCACCGGCACCACCAEST: gi|15692947|gb|BI717252.1|BI717252
genomic: CAGCCACCAGACGGACGAGCTCGTGGAGGGCGTGAGGGCCTGGCTGGCAGgtgggtccag ... gtgttcacagGCCTAGACGACTGGCACCTAGCGGCTATGGAGCAGCTCACCGGCACCACCA
EST: CAGCCACCAGACGGACGAGCTCGTGGAGGGCGTGAGGGCCTGGCTGGCAG GCCTAGACGACTGGCACCTAGCGGCTATGGAGCAGCTCACCGGCACCACCAEST: gi|15369995|gb|BI529421.1|BI529421
genomic: CAGCCACCAGACGGACGAGCTCGTGGAGGGCGTGAGGGCCTGGCTGGCAGgtgggtccag ... gtgttcacagGCCTAGACGACTGGCACCTAGCGGCTATGGAGCAGCTCACCGGCACCACCA
EST: CAGCCACCAGACGGACGAGCTCGTGGAGGGCGTGAGGGCCTGGCTGGCAG GCCTAGACGACTGGCACCTAG
genomic: CAGCCACCAGACGGACGAGCTCGTGGAGGGCGTGAGGGCCTGGCTGGCAGgtgggtccag ... gtgttcacagGCCTAGACGACTGGCACCTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCGCCAGGACGCGGGCTGGCGCTTCCTCATGTCGGACAACATCGCGGGCAGCCACCAGACGGACGAGCTCGTGGAGGGCGTGAGGGCCTGGCTGGCAGgtgggtccagtgcgcaggcccacagctgcgcctgctcatgctttggtgtcacagcttgatcgcagccgcgtggtggccaccgctgctgctgtgccggcaggcgccatcagcaggtctgacgcctgttcatggcaccgctctgtgttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG