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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTGGATAGGAAGCCAGTCCGCACGCCGGGGAAGAAGCTGGCCGTGCTGCCGTCCCATCCCTTGGCGCTCGCGGTGGCGGCTGAGTGGGAGTGGCAGgtgcgccacagccccgcctacgccacagccccgcctacgccacgtgtgcgccatcgtatctacttcatacgcgatgacagctacctggttaagatgctgacacgtcatgctaccatgtccaatggccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP00509
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15697916|gb|BI722221.1|BI722221
EST:     TGCCGTCCCATCCCTTGGCGCTCGCGGTGGCGGCTGAGTGGGAGTGGCAG                         GAGAAGGGCAAGCCGCAGCTGCACACCATGCCCATGATGAGCCTGGTGGCG
genomic: TGCCGTCCCATCCCTTGGCGCTCGCGGTGGCGGCTGAGTGGGAGTGGCAGgtgcgccaca ... atggccgcagGAGAAGGGCAAGCCGCAGCTGCACACCATGCCCATGATGAGCCTGGTGGCG
EST: gi|15692947|gb|BI717252.1|BI717252
EST:     TGCCGTCCCATCCCTTGGCGCTCGCGGTGGCGGCTGAGTGGGAGTGGCAG                         GAGAAGGGCAAGCCGCAGCTGCACACCATGCCCATGATGAGCCTGGTGGCG
genomic: TGCCGTCCCATCCCTTGGCGCTCGCGGTGGCGGCTGAGTGGGAGTGGCAGgtgcgccaca ... atggccgcagGAGAAGGGCAAGCCGCAGCTGCACACCATGCCCATGATGAGCCTGGTGGCG
EST: gi|15369995|gb|BI529421.1|BI529421
EST:     TGCCGTCCCATCCCTTGGCGCTCGCGGTGGCGGCTGAGTGGGAGTGGCAG                         GAGAAGGGCAAGCCGCAGCTGCACACCATGCCCATGATGAGCCTGGTGGCG
genomic: TGCCGTCCCATCCCTTGGCGCTCGCGGTGGCGGCTGAGTGGGAGTGGCAGgtgcgccaca ... atggccgcagGAGAAGGGCAAGCCGCAGCTGCACACCATGCCCATGATGAGCCTGGTGGCG