1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaagatcaagagtctgtacgtctgactgaacatgcaggtcatggcgaccagctgtgaaaaacgcttctgtttccgctgtgctgcctgtgcatatgcgcagGTCTTTGCGCTCTTAGACAAGGCCAGCTGCAGCTACCTGTCCGTTCCCCAGATGAAGGAGTACGTGCTTGAGTCG
species | Chlamydomonas reinhardtii |
transcript | EDP00402 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGAGCTGCCCACGTACGCGGACGGCTCGCGCGAAGCGACCTTTCTCAAG GTCTTTGCGCTCTTAGACAAGGCCAGCTGCAGCTACCTGTCCGTTCCCCAG
genomic: AGGAGCTGCCCACGTACGCGGACGGCTCGCGCGAAGCGACCTTTCTCAAGgtgccgcatt ... atatgcgcagGTCTTTGCGCTCTTAGACAAGGCCAGCTGCAGCTACCTGTCCGTTCCCCAG
gaccagctgtgaaaaacgcttctgtttccgctgtgctgcctgtgcatatgcgcagGTCTTTGCGCTCTTAGACAAGGCCAGCTGCAGCTACCTGTCCGTTCCCCAGATGAAGGAGTACGTGCTTGAGTCG
tgaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagatcaagagtctgtacgtctgactgaacatgcaggtcatggcgaccagctgtgaaaaacgcttctgtttccgctgtgctgcctgtgcatatgcgcagGTCTTTGCGCTCTTAGACAAGGCCAGCTGCAGCTACCTGTCCGTTCCCCAGATGAAGGAGTACGTGCTTGAGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - tgtacgt
- - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctgt