1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgattgggtggtctcagtacaagccgatccaaaggtttaggtctggtgggacactgggactgcctggacggccgaagacggtgcacacgtggcgagcggttgcctggtaacatggtgcttcccctgccgtccgcacagAATTTCCGGCGGATGATGATGCCGAGGAGCTGCCCACGTACGCGGACGGCTCGCGCGAAGCGACCTTTCTCAAG
species | Chlamydomonas reinhardtii |
transcript | EDP00402 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGGCCAACCAGAAGCGCATTGAGGAACTGAAGTCCCAATTCGTCGCAG AATTTCCGGCGGATGATGATGCCGAGGAGCTGCCCACGTACGCGGACGGCT
genomic: GGAGGCCAACCAGAAGCGCATTGAGGAACTGAAGTCCCAATTCGTCGCAGgtgattgggt ... gtccgcacagAATTTCCGGCGGATGATGATGCCGAGGAGCTGCCCACGTACGCGGACGGCT
cacacgtggcgagcggttgcctggtaacatggtgcttcccctgccgtccgcacagAATTTCCGGCGGATGATGATGCCGAGGAGCTGCCCACGTACGCGGACGGCTCGCGCGAAGCGACCTTTCTCAAG
tggtaac putative branch site (score: 2)
cttcccctgccgtcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattgggtggtctcagtacaagccgatccaaaggtttaggtctggtgggacactgggactgcctggacggccgaagacggtgcacacgtggcgagcggttgcctggtaacatggtgcttcccctgccgtccgcacagAATTTCCGGCGGATGATGATGCCGAGGAGCTGCCCACGTACGCGGACGGCTCGCGCGAAGCGACCTTTCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC