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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCAGCGACGCCGACGAGGGCGAGCACTCTCTAGCGTCCTCCGCCAGCCAGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAGgtgagcgcctcgcgcggggtacgcgagaatgtgccttcgagcgtccttttcgttcttgcccttacgttttcgcgccgcttcatactgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO99682
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34983685|gb|CF557602.1|CF557602
EST:     AGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAG                         GATTTTGAGTAACACCAAACAAAAGGGCTCGAGAACTGTACCTCGCTGAAG
genomic: AGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAGgtgagcgcct ... catactgcagGATTTTGAGTTCCTCCAAACAAAAGGGCTCGAGAACTGTACCTCGCTGAAG
EST: gi|34985302|gb|CF559219.1|CF559219
EST:     AGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAG                         GATTTTGAGTTCCTCCAAACAAAAGGGCTCGAGAACTGTACCTCGCTGAAG
genomic: AGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAGgtgagcgcct ... catactgcagGATTTTGAGTTCCTCCAAACAAAAGGGCTCGAGAACTGTACCTCGCTGAAG
EST: gi|9210814|gb|BE337729.1|BE337729
EST:     AGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAG                         GATTTTGAGTTCCTCCAAACAAAAGGGCTCGAGAACTGTACCTCGCTGAAG
genomic: AGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAGgtgagcgcct ... catactgcagGATTTTGAGTTCCTCCAAACAAAAGGGCTCGAGAACTGTACCTCGCTGAAG
EST: gi|34985301|gb|CF559218.1|CF559218
EST:     AGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAG                         GATTTTGAGTTCCTCCAAACAAAAGGGCTCGAGAACTGTACCTCGCTGAAG
genomic: AGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAGgtgagcgcct ... catactgcagGATTTTGAGTTCCTCCAAACAAAAGGGCTCGAGAACTGTACCTCGCTGAAG
EST: gi|22050785|gb|BQ809352.1|BQ809352
EST:     AGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAG                         GATTTTGAGTTCCTCCAAACAAAAGGGCTCGAGAACTGTACCTTGCTGAAG
genomic: AGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAGgtgagcgcct ... catactgcagGATTTTGAGTTCCTCCAAACAAAAGGGCTCGAGAACTGTACCTCGCTGAAG
EST: gi|34983684|gb|CF557601.1|CF557601
EST:     AGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAG                         GATTTGGAGTTCCTCCAAACAAAAGGGCTCGAGAACTGTACCTCGCTGAAG
genomic: AGGAGTCGCCTCGCCTGACCTTCCCCAGCCCCACTGGTCTTGACGCGGAGgtgagcgcct ... catactgcagGATTTTGAGTTCCTCCAAACAAAAGGGCTCGAGAACTGTACCTCGCTGAAG