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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTAGCAGGATGGGCCGCACCGAGTTACGCAACCTGGACGGGCACGGGCAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAGgtaagagcccgttgtggcccgtccaaggcccagcttccgcccgcgttgagctcacccaatcggcgttgtgtcctccctgtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO99682
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34983685|gb|CF557602.1|CF557602
EST:     CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAG                         GTCGTATGCCGCTAACTTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
genomic: CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAGgtaagagccc ... ccctgtgcagGTCGTATGCCGCTAACCTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
EST: gi|34985302|gb|CF559219.1|CF559219
EST:     CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAG                         GTCGTATGCCGCTAACTTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
genomic: CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAGgtaagagccc ... ccctgtgcagGTCGTATGCCGCTAACCTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
EST: gi|22050791|gb|BQ809353.1|BQ809353
EST:     CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAG                         GTCGTATGCCGCTAACCTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
genomic: CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAGgtaagagccc ... ccctgtgcagGTCGTATGCCGCTAACCTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
EST: gi|9210814|gb|BE337729.1|BE337729
EST:     CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAG                         GTCGTATGCCGCTAACCTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
genomic: CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAGgtaagagccc ... ccctgtgcagGTCGTATGCCGCTAACCTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
EST: gi|34983686|gb|CF557603.1|CF557603
EST:     CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAG                         GTCGTATGCCGCTAACTTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
genomic: CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAGgtaagagccc ... ccctgtgcagGTCGTATGCCGCTAACCTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
EST: gi|10791096|gb|AV628462.1|AV628462
EST:     CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAG                         GTCGTATGCCGCTAACCTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
genomic: CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAGgtaagagccc ... ccctgtgcagGTCGTATGCCGCTAACCTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
EST: gi|34985301|gb|CF559218.1|CF559218
EST:     CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAG                         GTCGTATGCCGCTAACTTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
genomic: CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAGgtaagagccc ... ccctgtgcagGTCGTATGCCGCTAACCTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
EST: gi|22050785|gb|BQ809352.1|BQ809352
EST:     CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAG                         GTCGTATGCCGCTAACCTGCACGCCATTGATAGTATGAGCCAGCTGACAAT
genomic: CAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAGgtaagagccc ... ccctgtgcagGTCGTATGCCGCTAACCTGCACGCCATTGATAGTATGAGCCAGCTGACAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGACTAGCAGGATGGGCCGCACCGAGTTACGCAACCTGGACGGGCACGGGCAGGCGGTGCTCAAGCAGATGAAGAGCTTGGGGCTGCGGAGGGCGGCGAGgtaagagcccgttgtggcccgtccaaggcccagcttccgcccgcgttgagctcacccaatcggcgttgtgtcctccctgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT