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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacgcctcttcactgagactgcatcacttgcttcgctcgcttgttagcgtccgcgttggatcgatgcacatgaattctagcagacttacgcatatcatgtgccaattacaattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGGCTCGTCCCCGCACCGCGGTGGTCGTTCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO99584
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15702046|gb|BI726351.1|BI726351
EST:     GAACAAAAATGTCTGCCATGCTCCGTCAACAAG                         GCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
genomic: GAACAAAAATGTCTGCCATGCTCCGTCAACAAGgtacacgcct ... aattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
EST: gi|161803556|gb|FC090520.1|FC090520
EST:     GAACAAAAATGTCTGCCATGCTCCGTCAACAAG                         GTCTCGTCTCCTGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
genomic: GAACAAAAATGTCTGCCATGCTCCGTCAACAAGgtacacgcct ... aattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
EST: gi|15693681|gb|BI717986.1|BI717986
EST:     CAAAAATGTCTGCCATGCTCCGTCAACAAG                         GCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
genomic: CAAAAATGTCTGCCATGCTCCGTCAACAAGgtacacgcct ... aattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
EST: gi|8576740|gb|BE129377.1|BE129377
EST:     AGAACAAAAATGTCTGCCATGCTCCGTCAACAAG                         GCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
genomic: AGAACAAAAATGTCTGCCATGCTCCGTCAACAAGgtacacgcct ... aattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
EST: gi|9210742|gb|BE337657.1|BE337657
EST:     AAAAATGTCTGCCATGCTCCGTCAACAAG                         GCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
genomic: AAAAATGTCTGCCATGCTCCGTCAACAAGgtacacgcct ... aattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
EST: gi|16438220|gb|BM003440.1|BM003440
EST:     CAAAAATGTCTGCCATGCTCCGTCAACAAG                         GCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
genomic: CAAAAATGTCTGCCATGCTCCGTCAACAAGgtacacgcct ... aattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
EST: gi|10126580|gb|BE725284.1|BE725284
EST:     AAAAATGTCTGCCATGCTCCGTCAACAAG                         GCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
genomic: AAAAATGTCTGCCATGCTCCGTCAACAAGgtacacgcct ... aattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
EST: gi|8828368|gb|BE212098.1|BE212098
EST:     AAAAATGTCTGCCATGCTCCGTCAACAAG                         GCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
genomic: AAAAATGTCTGCCATGCTCCGTCAACAAGgtacacgcct ... aattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
EST: gi|14229598|gb|BG848414.1|BG848414
EST:     AATGTCTGCCATGCTCCGTCAACAAG                         GCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
genomic: AATGTCTGCCATGCTCCGTCAACAAGgtacacgcct ... aattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
EST: gi|49460696|gb|BP088609.1|BP088609
EST:     TCTGCCATGCTCCGTCAACAAG                         GCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
genomic: TCTGCCATGCTCCGTCAACAAGgtacacgcct ... aattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
EST: gi|161822228|gb|FC107676.1|FC107676
EST:     GAACAAAAATGTCTGCCATGCTCCGTCAACAAG                         GTCTCGTCTCCTGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
genomic: GAACAAAAATGTCTGCCATGCTCCGTCAACAAGgtacacgcct ... aattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
EST: gi|14240185|gb|BG859001.1|BG859001
EST:     CAAAAATGTCTGCCATGCTCCGTCAACAAG                         GCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG
genomic: CAAAAATGTCTGCCATGCTCCGTCAACAAGgtacacgcct ... aattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcacatgaattctagcagacttacgcatatcatgtgccaattacaattttgcagGCCTCGTCTCCCGGCCTGCTGCGCGTAGCCAGCAGGTCCGCCCTGCGGTGGCTCGTCCCCGCACCGCGGTGGTCGTTCG
                  gacttac  putative branch site (score: 2)
                                       aattacaatttt  TA-rich tract